Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   O7776_RS20185 Genome accession   NZ_CP114887
Coordinates   4088959..4089522 (-) Length   187 a.a.
NCBI ID   WP_274308650.1    Uniprot ID   -
Organism   Solibacillus daqui strain ZS111008 isolate Daqu     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4083959..4094522
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O7776_RS20165 rplI 4085048..4085494 (-) 447 WP_274308648.1 50S ribosomal protein L9 -
  O7776_RS20170 - 4085491..4087464 (-) 1974 WP_241370656.1 DHH family phosphoesterase -
  O7776_RS20175 - 4087478..4088425 (-) 948 WP_274308649.1 YybS family protein -
  O7776_RS20180 rpsR 4088675..4088914 (-) 240 WP_188227411.1 30S ribosomal protein S18 -
  O7776_RS20185 ssbA 4088959..4089522 (-) 564 WP_274308650.1 single-stranded DNA-binding protein Machinery gene
  O7776_RS20190 rpsF 4089560..4089850 (-) 291 WP_241370653.1 30S ribosomal protein S6 -
  O7776_RS20195 - 4090027..4090563 (+) 537 WP_274308651.1 DUF3267 domain-containing protein -
  O7776_RS20200 - 4090980..4093772 (+) 2793 WP_274308652.1 hypothetical protein -

Sequence

Protein


Download         Length: 187 a.a.        Molecular weight: 20526.48 Da        Isoelectric Point: 4.7719

>NTDB_id=767418 O7776_RS20185 WP_274308650.1 4088959..4089522(-) (ssbA) [Solibacillus daqui strain ZS111008 isolate Daqu]
MINRVVLVGRLTKDPELRYTPSGVPMARFTIAVNRTFSGQSGEREADFIGCIAWRKQAENLANFMRKGSLVGVEGRIQTG
SYEGQDGKRVYTTDVVADAVQFLEPRGGASTSQGMQGNQQYGGGQNNYGGQPSYNQPNQQFGGAQPQDSYGSYQQPPQNQ
QNYTRVDEDPFANSKGPIEVSEDDLPF

Nucleotide


Download         Length: 564 bp        

>NTDB_id=767418 O7776_RS20185 WP_274308650.1 4088959..4089522(-) (ssbA) [Solibacillus daqui strain ZS111008 isolate Daqu]
ATGATTAACCGTGTTGTATTAGTTGGAAGACTAACAAAGGATCCAGAGCTTCGTTACACACCGAGTGGAGTTCCAATGGC
GCGTTTTACAATTGCTGTAAACCGTACTTTTTCGGGCCAATCGGGTGAACGCGAAGCAGATTTCATAGGCTGTATTGCCT
GGAGAAAACAAGCTGAAAACTTAGCGAACTTCATGCGAAAAGGAAGTTTAGTTGGTGTGGAAGGCCGTATTCAAACGGGT
AGCTATGAAGGACAAGATGGTAAGCGTGTATACACAACAGATGTCGTTGCAGATGCTGTGCAGTTCTTAGAGCCGCGCGG
AGGAGCAAGTACATCACAAGGTATGCAAGGTAACCAACAATATGGCGGTGGGCAGAATAATTATGGTGGACAACCATCAT
ACAATCAGCCAAACCAACAATTTGGAGGAGCTCAACCACAAGATTCTTATGGTTCTTATCAACAACCACCTCAAAATCAG
CAAAATTATACACGTGTAGATGAAGATCCATTTGCAAATAGTAAAGGGCCAATTGAGGTTTCTGAAGACGATTTACCGTT
CTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

53.476

100

0.535
  ssb Latilactobacillus sakei subsp. sakei 23K

49.198

100

0.492