Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   O2T12_RS06210 Genome accession   NZ_CP114886
Coordinates   1448155..1449036 (-) Length   293 a.a.
NCBI ID   WP_269673035.1    Uniprot ID   -
Organism   Endozoicomonas sp. GU-1 strain Ap1-3     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1443155..1454036
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O2T12_RS06195 (O2T12_06195) - 1443601..1445691 (+) 2091 WP_269673032.1 EAL domain-containing protein -
  O2T12_RS06200 (O2T12_06200) - 1445881..1447503 (+) 1623 WP_269673033.1 NAD+ synthase -
  O2T12_RS06205 (O2T12_06205) coaE 1447526..1448158 (-) 633 WP_269673034.1 dephospho-CoA kinase -
  O2T12_RS06210 (O2T12_06210) pilD 1448155..1449036 (-) 882 WP_269673035.1 A24 family peptidase Machinery gene
  O2T12_RS06215 (O2T12_06215) - 1449430..1450845 (+) 1416 WP_269676929.1 ankyrin repeat domain-containing protein -
  O2T12_RS06220 (O2T12_06220) - 1450820..1451068 (+) 249 WP_269676930.1 hypothetical protein -
  O2T12_RS06225 (O2T12_06225) - 1451274..1451984 (+) 711 WP_269673037.1 TAXI family TRAP transporter solute-binding subunit -
  O2T12_RS06230 (O2T12_06230) - 1452070..1453683 (+) 1614 WP_269673038.1 TRAP transporter fused permease subunit -

Sequence

Protein


Download         Length: 293 a.a.        Molecular weight: 32405.66 Da        Isoelectric Point: 6.6899

>NTDB_id=767361 O2T12_RS06210 WP_269673035.1 1448155..1449036(-) (pilD) [Endozoicomonas sp. GU-1 strain Ap1-3]
MSPIIELIETSTPYLTFVLTIFGLIVGSFLNVVIHRLPIMMERQWQQQSEAILHPEKIPDPLPAFNLVVPASTCPSCQHK
IRAWENIPVISYLFLRGKCSACRTPISLRYPAIEILSALMTIMIGLTYGVTLQTLVFCLFGWSLLALTMIDYDTQLLPDD
ITLPLLWTGLIVNSFGLVVSLEQALWGAIAGYLSLWSVYWVFKLVTGKEGMGYGDFKLLAALGAWLGWMKLPLIILLSSL
VGTVAAILLIVSKRQERSNPIPFGPYLAIAGFVALVWGDQLIAVYLSFSGLNG

Nucleotide


Download         Length: 882 bp        

>NTDB_id=767361 O2T12_RS06210 WP_269673035.1 1448155..1449036(-) (pilD) [Endozoicomonas sp. GU-1 strain Ap1-3]
ATGTCACCGATTATAGAACTTATAGAGACCTCAACCCCTTACCTGACCTTTGTGCTGACCATCTTTGGCTTGATTGTCGG
TAGTTTTCTCAATGTGGTGATCCACCGGTTACCGATAATGATGGAAAGGCAGTGGCAGCAGCAGAGTGAAGCTATTTTAC
ACCCGGAAAAGATACCGGATCCTCTGCCTGCTTTTAACCTTGTGGTGCCTGCATCTACCTGTCCTTCCTGTCAGCATAAA
ATCCGTGCCTGGGAGAATATTCCGGTGATCAGCTATCTGTTCCTGAGAGGTAAATGCTCAGCCTGCCGGACCCCGATTTC
ATTGCGCTATCCGGCCATCGAGATACTCAGCGCCCTGATGACGATAATGATTGGCCTGACCTACGGCGTGACATTACAGA
CACTGGTCTTCTGTCTGTTCGGCTGGTCACTGCTGGCACTGACCATGATCGACTACGATACCCAGCTACTGCCTGACGAT
ATTACTCTGCCACTGCTCTGGACAGGCCTGATCGTCAACAGCTTTGGACTGGTGGTAAGCCTTGAACAGGCGCTGTGGGG
AGCCATTGCCGGTTACCTTTCCCTGTGGAGTGTTTACTGGGTATTCAAACTGGTGACCGGCAAGGAAGGCATGGGCTACG
GTGACTTTAAACTGCTGGCGGCGCTGGGAGCCTGGCTGGGCTGGATGAAGCTGCCCCTGATCATCCTGCTCTCATCACTG
GTTGGCACTGTTGCAGCGATACTGTTGATCGTCAGTAAACGCCAGGAACGATCCAACCCGATTCCCTTTGGTCCTTATCT
GGCCATTGCCGGCTTTGTTGCCCTGGTCTGGGGCGATCAACTGATTGCGGTTTATCTGAGCTTTTCGGGTTTGAACGGAT
GA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(139-246)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(21-126)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

54.152

94.539

0.512
  pilD Vibrio campbellii strain DS40M4

53.43

94.539

0.505
  pilD Acinetobacter baumannii D1279779

51.22

97.952

0.502
  pilD Acinetobacter nosocomialis M2

50.523

97.952

0.495
  pilD Neisseria gonorrhoeae MS11

48.718

93.174

0.454