Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   O6R09_RS05485 Genome accession   NZ_CP114883
Coordinates   1057516..1059330 (-) Length   604 a.a.
NCBI ID   WP_154454616.1    Uniprot ID   -
Organism   Streptococcus alactolyticus strain LGM     
Function   regulate competence (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 1053982..1086659 1057516..1059330 within 0


Gene organization within MGE regions


Location: 1053982..1086659
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O6R09_RS05465 (O6R09_05465) - 1053982..1054902 (-) 921 WP_269725871.1 glycine betaine ABC transporter substrate-binding protein -
  O6R09_RS05470 (O6R09_05470) - 1054892..1055527 (-) 636 Protein_1018 ABC transporter permease -
  O6R09_RS05475 (O6R09_05475) - 1055605..1055757 (+) 153 WP_154454618.1 hypothetical protein -
  O6R09_RS05480 (O6R09_05480) rcrQ 1055754..1057526 (-) 1773 WP_154454617.1 ABC transporter ATP-binding protein Regulator
  O6R09_RS05485 (O6R09_05485) rcrP 1057516..1059330 (-) 1815 WP_154454616.1 ABC transporter ATP-binding protein Regulator
  O6R09_RS05490 (O6R09_05490) rcrR 1059341..1059775 (-) 435 WP_235280696.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  O6R09_RS05495 (O6R09_05495) - 1059920..1060330 (-) 411 WP_154454614.1 peptide deformylase -
  O6R09_RS05500 (O6R09_05500) gdhA 1060420..1061769 (-) 1350 WP_154454613.1 NADP-specific glutamate dehydrogenase -
  O6R09_RS05505 (O6R09_05505) - 1062005..1062502 (+) 498 WP_154454612.1 HdeD family acid-resistance protein -
  O6R09_RS05510 (O6R09_05510) queF 1062551..1063041 (-) 491 Protein_1026 preQ(1) synthase -
  O6R09_RS05515 (O6R09_05515) queE 1063054..1063767 (-) 714 WP_154454611.1 7-carboxy-7-deazaguanine synthase QueE -
  O6R09_RS05520 (O6R09_05520) queD 1063733..1064206 (-) 474 WP_154454610.1 6-carboxytetrahydropterin synthase QueD -
  O6R09_RS05525 (O6R09_05525) queC 1064206..1064676 (-) 471 Protein_1029 7-cyano-7-deazaguanine synthase QueC -
  O6R09_RS05530 (O6R09_05530) - 1064670..1066094 (-) 1425 Protein_1030 VirB4-like conjugal transfer ATPase, CD1110 family -
  O6R09_RS05535 (O6R09_05535) - 1066215..1066697 (-) 483 WP_154454609.1 hypothetical protein -
  O6R09_RS05540 (O6R09_05540) - 1066709..1067461 (-) 753 WP_154454630.1 hypothetical protein -
  O6R09_RS05545 (O6R09_05545) - 1067535..1068075 (-) 541 Protein_1033 hypothetical protein -
  O6R09_RS05550 (O6R09_05550) - 1068156..1068383 (-) 228 WP_043037322.1 hypothetical protein -
  O6R09_RS05555 (O6R09_05555) - 1068656..1072072 (-) 3417 WP_154454608.1 GBS Bsp-like repeat-containing protein -
  O6R09_RS05560 (O6R09_05560) - 1072270..1074057 (-) 1788 WP_269725484.1 LPXTG cell wall anchor domain-containing protein -
  O6R09_RS05565 (O6R09_05565) - 1074069..1074455 (-) 387 WP_154454607.1 hypothetical protein -
  O6R09_RS05570 (O6R09_05570) - 1074568..1074762 (-) 195 Protein_1038 7-cyano-7-deazaguanine synthase -
  O6R09_RS05575 (O6R09_05575) - 1074947..1076716 (-) 1770 WP_154454606.1 ABC transporter ATP-binding protein -
  O6R09_RS05580 (O6R09_05580) - 1076719..1078458 (-) 1740 WP_154454605.1 ABC transporter ATP-binding protein -
  O6R09_RS05585 (O6R09_05585) - 1078523..1080394 (-) 1872 WP_235280699.1 ABC-F family ATP-binding cassette domain-containing protein -
  O6R09_RS05590 (O6R09_05590) - 1080391..1081596 (-) 1206 WP_269725485.1 CCA tRNA nucleotidyltransferase -
  O6R09_RS05595 (O6R09_05595) dapB 1081593..1082360 (-) 768 WP_235280700.1 4-hydroxy-tetrahydrodipicolinate reductase -
  O6R09_RS05600 (O6R09_05600) - 1082389..1083234 (-) 846 WP_154454601.1 DegV family protein -
  O6R09_RS05605 (O6R09_05605) - 1083234..1083614 (-) 381 WP_154454600.1 DUF1149 family protein -
  O6R09_RS05610 (O6R09_05610) - 1083714..1084394 (-) 681 WP_269725486.1 TMEM175 family protein -
  O6R09_RS05615 (O6R09_05615) - 1084465..1085001 (-) 537 WP_154454598.1 GNAT family N-acetyltransferase -
  O6R09_RS05620 (O6R09_05620) - 1085994..1086659 (-) 666 WP_235280703.1 glucosaminidase domain-containing protein -

Sequence

Protein


Download         Length: 604 a.a.        Molecular weight: 67158.11 Da        Isoelectric Point: 7.5744

>NTDB_id=767337 O6R09_RS05485 WP_154454616.1 1057516..1059330(-) (rcrP) [Streptococcus alactolyticus strain LGM]
MLKILKRLTAKEITMLVFAILFVCLNVYLDLKIPDYMSTITKLLSTQGTKADDIFAWNVDSPGMRMILLSFASFLSAVVV
GFLASRIAASFSTSLRDDIFHSVLNFSDAEIKKFSIPSLLTRTTNDITQIQLVFTMGIQVVTKGPIMAIWAITKIADKNH
EWLWVLIVAVAVMFLMLTFLLIVVMPKQRIIQKLTDKLNSITRESLTGIRVVRAYNAESYQDGKFAKANDDVTNTNLFIN
RSMAILSPVMTAISSGMTLAIYWIGAHLIEDVAIPKDPTKIAGAMHDKVGLFSDMIVYSSYAMQVVMGFMMMIVVFFILP
RAVVAAGRINEVLETKTSIAYPEATKEQPTEKGSIEFDNVSFRYSKTSEAVLEHVSFKAKAGETVAFIGSTGSGKSTLVN
LIPRFYDATEGTIKVDGLDVRQYDHDTLHNIVGYIPQKAVLFSGDIASNMDMGESPESPLNDSQMWEALDLAQGREFVER
KEGQLKAPVSQGGQNFSGGQKQRLAIARALARKPEIIIFDDSFSALDYKTDRILRTQLREKTSHMTKLIVAQRIATIMDA
DQILVLDKGRVVGQGTHKELLASNEVYREIAYSQLSKEELENGK

Nucleotide


Download         Length: 1815 bp        

>NTDB_id=767337 O6R09_RS05485 WP_154454616.1 1057516..1059330(-) (rcrP) [Streptococcus alactolyticus strain LGM]
ATGTTAAAAATTTTGAAACGTTTAACGGCAAAGGAAATCACCATGCTTGTCTTTGCCATCTTATTCGTTTGCTTAAATGT
GTATCTTGATTTGAAAATCCCAGATTACATGTCAACGATTACCAAGCTCTTGTCAACGCAAGGGACAAAGGCGGATGATA
TTTTCGCTTGGAATGTTGATTCTCCAGGAATGCGAATGATTTTGCTATCGTTTGCTAGTTTCTTATCAGCTGTTGTTGTC
GGCTTTTTAGCTTCTCGTATCGCGGCAAGTTTTAGTACGAGCTTGCGAGATGACATTTTCCACAGTGTTTTGAATTTCTC
TGATGCTGAAATCAAGAAATTTTCAATTCCAAGTCTTTTAACCCGTACAACCAACGATATCACACAAATTCAATTGGTAT
TTACCATGGGAATTCAGGTGGTTACCAAAGGACCTATCATGGCTATTTGGGCCATTACGAAGATTGCCGATAAAAACCAC
GAATGGCTTTGGGTATTGATTGTCGCTGTTGCAGTCATGTTCTTGATGTTGACCTTCCTACTCATTGTCGTTATGCCTAA
GCAACGTATTATCCAAAAATTAACGGATAAATTGAATAGTATTACTCGTGAGTCGTTGACTGGTATTCGTGTGGTTCGTG
CTTACAACGCCGAATCTTACCAAGATGGCAAATTCGCCAAAGCCAATGACGATGTAACCAATACCAACTTGTTCATCAAC
CGTTCAATGGCTATCTTGTCACCAGTCATGACAGCAATCTCTAGCGGAATGACTTTGGCCATTTACTGGATTGGGGCACA
TTTGATTGAAGATGTGGCTATTCCAAAAGATCCAACTAAAATTGCTGGTGCCATGCATGACAAAGTCGGACTTTTCTCTG
ATATGATCGTTTACTCATCTTATGCCATGCAAGTCGTTATGGGATTTATGATGATGATTGTCGTCTTCTTCATTTTGCCA
CGTGCGGTTGTCGCAGCTGGTCGTATCAATGAAGTGCTAGAAACTAAGACCTCAATTGCTTACCCTGAAGCTACTAAAGA
ACAACCAACTGAAAAAGGGTCTATCGAATTTGACAATGTGTCTTTCCGTTACAGCAAAACTTCAGAAGCTGTTTTGGAAC
ACGTTTCATTCAAAGCTAAAGCTGGTGAAACGGTTGCCTTTATCGGTTCTACAGGTTCAGGTAAATCAACGCTTGTGAAT
TTGATTCCGCGTTTCTATGACGCTACTGAAGGAACGATTAAAGTCGATGGTTTAGACGTTCGCCAATATGACCACGATAC
CTTGCATAATATTGTCGGTTATATTCCACAAAAAGCTGTCTTGTTTAGTGGTGATATCGCTTCTAATATGGACATGGGTG
AAAGCCCTGAATCTCCTCTAAATGATAGCCAAATGTGGGAAGCACTAGATTTGGCACAAGGTAGAGAATTTGTGGAACGC
AAAGAAGGGCAACTGAAAGCGCCTGTATCACAAGGCGGCCAAAACTTCTCTGGTGGTCAAAAACAACGTTTGGCGATTGC
GCGTGCTTTGGCGCGTAAACCTGAAATTATCATTTTCGATGATTCCTTCTCTGCTCTTGATTACAAGACAGACCGTATCT
TACGTACTCAATTAAGAGAAAAAACAAGTCACATGACAAAATTGATTGTGGCGCAACGTATCGCAACCATTATGGACGCC
GACCAAATCCTTGTTCTAGACAAAGGCCGTGTGGTTGGTCAAGGAACACACAAAGAATTGTTGGCATCTAATGAAGTTTA
CCGTGAAATTGCGTACTCACAATTATCTAAGGAGGAATTAGAAAATGGAAAATAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(372-522)

ABC transporter transmembrane region (ABC_membrane)

(17-271)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

65.62

100

0.657