Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   O6R09_RS05480 Genome accession   NZ_CP114883
Coordinates   1055754..1057526 (-) Length   590 a.a.
NCBI ID   WP_154454617.1    Uniprot ID   -
Organism   Streptococcus alactolyticus strain LGM     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1050754..1062526
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O6R09_RS05450 (O6R09_05450) - 1051050..1052354 (-) 1305 WP_269725483.1 conjugated bile salt MFS transporter -
  O6R09_RS05455 (O6R09_05455) - 1052510..1053124 (-) 615 Protein_1015 polyprenyl synthetase family protein -
  O6R09_RS05460 (O6R09_05460) - 1053199..1053955 (-) 757 Protein_1016 ABC transporter ATP-binding protein -
  O6R09_RS05465 (O6R09_05465) - 1053982..1054902 (-) 921 WP_269725871.1 glycine betaine ABC transporter substrate-binding protein -
  O6R09_RS05470 (O6R09_05470) - 1054892..1055527 (-) 636 Protein_1018 ABC transporter permease -
  O6R09_RS05475 (O6R09_05475) - 1055605..1055757 (+) 153 WP_154454618.1 hypothetical protein -
  O6R09_RS05480 (O6R09_05480) rcrQ 1055754..1057526 (-) 1773 WP_154454617.1 ABC transporter ATP-binding protein Regulator
  O6R09_RS05485 (O6R09_05485) rcrP 1057516..1059330 (-) 1815 WP_154454616.1 ABC transporter ATP-binding protein Regulator
  O6R09_RS05490 (O6R09_05490) rcrR 1059341..1059775 (-) 435 WP_235280696.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  O6R09_RS05495 (O6R09_05495) - 1059920..1060330 (-) 411 WP_154454614.1 peptide deformylase -
  O6R09_RS05500 (O6R09_05500) gdhA 1060420..1061769 (-) 1350 WP_154454613.1 NADP-specific glutamate dehydrogenase -
  O6R09_RS05505 (O6R09_05505) - 1062005..1062502 (+) 498 WP_154454612.1 HdeD family acid-resistance protein -

Sequence

Protein


Download         Length: 590 a.a.        Molecular weight: 65296.26 Da        Isoelectric Point: 5.2195

>NTDB_id=767336 O6R09_RS05480 WP_154454617.1 1055754..1057526(-) (rcrQ) [Streptococcus alactolyticus strain LGM]
MENKKKTSFYSQLKPYIKGFRLPFLLSVIGACISATVTVIGPDKLKEITNTITKGLTPTATGTIPGIDLDKIGHIAMTLA
ILYGIAAVVGYIQNFTVATIVQRFSQRLRRAIQDKIDNVPLNYFDSHAQGDTLSRVTNDVDLFAQSLNQSLGTLVTSTML
LIGSIIMMFYSNISMAFTTIGSVLIGFVLVIVIIGSSQPLFKRQQNNLAAINGYVEEIYSGHNVITSYNAAEEVSESFKE
LNQNLYKSMWQSQFLSGIMMPLMIFIGNFGYVMVCVVGAVKVINGDLNMGDVVAFMTYVRIFSQPLSQIAQAFTQLQSAI
AAMGRVFDFLGEEEMEDDSDKKRQLNHVKGEVAFDNVFFGYSKDKTIIHDFSAVAKPGQKVAIVGPTGAGKTTIVNLLMK
FYNIDKGRISIDGVDTRLMSREEVHDQFSMVLQDTWLFEGTIKENLVYNQENITDAQVIAAAKAVGVHHFIMTLPDGYDT
YLDDSVTLSIGQKQLLTIARSLLKDAPLLILDEATSSVDTRTEELIQKAMDKLMEGRTSFVIAHRLSTIKNADLILVMKD
GNIIEQGNHDELMEQGGFYSDLYNSQFEVA

Nucleotide


Download         Length: 1773 bp        

>NTDB_id=767336 O6R09_RS05480 WP_154454617.1 1055754..1057526(-) (rcrQ) [Streptococcus alactolyticus strain LGM]
ATGGAAAATAAAAAGAAAACAAGTTTCTATAGTCAATTGAAACCTTATATCAAAGGTTTCAGACTTCCATTTCTCCTTTC
GGTTATTGGTGCTTGTATTTCAGCCACGGTAACGGTTATCGGTCCTGATAAGCTAAAAGAAATCACCAATACCATTACCA
AAGGCTTAACACCAACGGCTACTGGAACGATTCCAGGTATTGATTTGGATAAAATTGGTCATATTGCGATGACCTTGGCC
ATTTTGTATGGGATTGCAGCTGTTGTGGGTTACATTCAAAACTTCACTGTGGCCACTATCGTTCAACGTTTTTCACAACG
TTTGCGTCGAGCTATCCAAGATAAGATTGATAATGTGCCATTGAATTATTTCGATAGCCATGCCCAAGGGGATACCTTGT
CACGCGTCACAAACGACGTCGATTTGTTCGCCCAATCACTTAACCAAAGTTTAGGAACACTGGTAACATCAACGATGTTG
TTGATTGGCTCAATCATCATGATGTTCTATTCAAACATCAGCATGGCCTTCACTACAATTGGTTCTGTCTTGATTGGCTT
TGTCTTGGTGATCGTGATTATAGGTTCTTCACAACCCCTCTTCAAACGCCAACAAAATAACCTAGCTGCCATTAACGGTT
ATGTCGAAGAAATTTATTCTGGTCATAACGTGATAACAAGCTACAATGCAGCAGAAGAAGTGAGCGAATCCTTTAAAGAA
TTGAACCAAAACCTTTACAAATCAATGTGGCAATCACAATTCTTATCAGGTATTATGATGCCTTTGATGATTTTCATTGG
TAACTTTGGTTACGTTATGGTCTGTGTCGTTGGTGCGGTCAAAGTTATCAACGGTGACCTAAACATGGGTGACGTTGTTG
CCTTCATGACTTATGTGCGTATCTTCTCACAACCCCTTTCTCAAATCGCTCAAGCCTTCACCCAATTGCAATCAGCTATT
GCCGCTATGGGACGTGTCTTTGATTTCCTTGGCGAAGAAGAAATGGAAGACGATTCTGATAAGAAACGTCAACTTAACCA
TGTGAAAGGTGAAGTCGCTTTTGATAATGTTTTCTTTGGTTACTCTAAAGATAAAACCATTATTCATGACTTTTCAGCTG
TGGCAAAACCTGGTCAAAAAGTTGCGATTGTTGGACCAACAGGTGCTGGTAAAACTACCATTGTTAACTTGTTGATGAAA
TTCTACAACATTGATAAAGGTCGCATCAGTATTGACGGCGTGGATACGCGTTTGATGTCACGTGAAGAAGTGCATGACCA
ATTCTCAATGGTGCTTCAAGACACTTGGTTGTTTGAAGGAACTATTAAGGAAAACTTGGTTTATAACCAAGAAAACATCA
CTGATGCGCAAGTCATTGCAGCAGCTAAGGCTGTTGGTGTGCACCACTTTATCATGACCTTGCCAGACGGTTACGACACT
TATTTGGATGATTCCGTAACGCTTTCAATCGGTCAAAAACAATTGTTGACCATTGCGCGTTCTCTGTTGAAAGATGCTCC
ATTGCTTATTTTGGACGAAGCCACATCTTCAGTTGATACACGTACTGAAGAATTGATTCAAAAAGCCATGGATAAATTGA
TGGAAGGACGCACATCATTTGTTATCGCTCACCGTCTATCAACCATTAAAAATGCCGATTTGATTCTCGTGATGAAAGAT
GGTAATATCATCGAACAAGGTAACCACGATGAATTGATGGAACAAGGTGGCTTCTATTCAGATCTTTACAATTCACAATT
TGAAGTCGCTTAA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(25-306)

ABC transporter (ABC_tran)

(370-516)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

71.115

100

0.714