Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpX   Type   Regulator
Locus tag   O6R09_RS05315 Genome accession   NZ_CP114883
Coordinates   1027074..1028306 (-) Length   410 a.a.
NCBI ID   WP_168260665.1    Uniprot ID   -
Organism   Streptococcus alactolyticus strain LGM     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1022074..1033306
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O6R09_RS05290 (O6R09_05290) - 1022213..1024321 (+) 2109 WP_235281031.1 ATP-dependent Clp protease ATP-binding subunit -
  O6R09_RS05295 (O6R09_05295) mmuM 1024375..1025322 (-) 948 WP_235281030.1 homocysteine S-methyltransferase -
  O6R09_RS05300 (O6R09_05300) - 1025337..1025576 (-) 240 Protein_983 amino acid permease -
  O6R09_RS05305 (O6R09_05305) - 1025595..1026281 (-) 687 WP_235281029.1 CPBP family intramembrane glutamic endopeptidase -
  O6R09_RS05310 (O6R09_05310) yihA 1026470..1027066 (-) 597 WP_154455226.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  O6R09_RS05315 (O6R09_05315) clpX 1027074..1028306 (-) 1233 WP_168260665.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  O6R09_RS05320 (O6R09_05320) - 1028340..1028510 (-) 171 WP_154455224.1 hypothetical protein -
  O6R09_RS05325 (O6R09_05325) - 1028518..1029012 (-) 495 WP_154455223.1 dihydrofolate reductase -
  O6R09_RS05330 (O6R09_05330) - 1029099..1029938 (-) 840 WP_264879506.1 thymidylate synthase -
  O6R09_RS05335 (O6R09_05335) - 1030200..1031378 (+) 1179 WP_154455221.1 hydroxymethylglutaryl-CoA synthase -
  O6R09_RS05340 (O6R09_05340) - 1031353..1032636 (+) 1284 WP_154455220.1 hydroxymethylglutaryl-CoA reductase, degradative -
  O6R09_RS05345 (O6R09_05345) - 1032747..1033190 (+) 444 WP_154455219.1 DUF1836 domain-containing protein -

Sequence

Protein


Download         Length: 410 a.a.        Molecular weight: 45243.80 Da        Isoelectric Point: 4.4376

>NTDB_id=767335 O6R09_RS05315 WP_168260665.1 1027074..1028306(-) (clpX) [Streptococcus alactolyticus strain LGM]
MVGNRTNDVKVYCSFCGKGQDEVKKIIAGNNVFICNECVALSQEIIREELAEEVLADLSEVPKPKELMAMLDEYVVGQEC
AKRALSVAVYNHYKRVAFAENRDEEDVDLQKSNILMIGPTGSGKTFLAQTLAKTLNVPFAIADATSLTEAGYVGEDVENI
LLKLIQAADFNIERAERGIIYIDEIDKIAKKGENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPNQEMIQIDTK
NILFIVGGAFDGIEDIVKQRLGEKVIGFGQNNRKIADDASYMQEIISEDIQKFGLIPEFIGRLPVVAALEKLTADDLVRI
LTEPRNALVKQYQTLMSYDGVELEFDDDALQAIANKAIERRTGARGLRSIIEETMMDVMFEVPSQEDVTKVRITKATVDG
TEKPILEIAS

Nucleotide


Download         Length: 1233 bp        

>NTDB_id=767335 O6R09_RS05315 WP_168260665.1 1027074..1028306(-) (clpX) [Streptococcus alactolyticus strain LGM]
ATGGTTGGAAATCGAACAAATGATGTTAAAGTATATTGTTCTTTCTGTGGGAAAGGACAAGACGAAGTCAAGAAAATCAT
TGCAGGAAACAATGTGTTCATTTGTAATGAATGCGTGGCTTTGTCCCAAGAAATTATCCGTGAAGAACTGGCGGAAGAAG
TGCTAGCGGATTTATCAGAAGTTCCAAAACCAAAAGAATTGATGGCGATGCTTGATGAATACGTTGTCGGGCAAGAATGT
GCCAAACGTGCGCTTTCTGTGGCGGTTTATAACCACTACAAACGCGTGGCTTTTGCAGAAAACCGCGATGAAGAAGATGT
TGATTTGCAAAAATCAAATATCTTGATGATTGGCCCAACGGGTTCAGGGAAGACTTTCCTTGCGCAAACCTTGGCCAAAA
CCTTGAATGTTCCATTTGCGATTGCCGATGCGACATCATTGACTGAGGCAGGTTATGTCGGAGAAGACGTTGAAAATATC
TTGCTCAAACTGATTCAAGCGGCTGACTTTAATATTGAACGAGCTGAGCGCGGAATTATCTACATCGACGAAATCGATAA
AATCGCGAAAAAAGGGGAAAATGTATCCATTACGCGTGATGTTTCTGGTGAAGGGGTGCAACAAGCACTTTTGAAAATCA
TCGAAGGAACCGTTGCCAGCGTGCCACCACAAGGTGGACGAAAACACCCAAATCAAGAAATGATTCAAATCGATACCAAA
AATATCCTCTTTATCGTTGGTGGTGCTTTTGATGGCATCGAAGACATTGTCAAACAACGTTTGGGTGAAAAAGTTATCGG
CTTTGGTCAAAACAACCGTAAAATTGCTGATGATGCTTCTTATATGCAAGAAATCATCTCAGAAGATATTCAAAAATTCG
GTTTGATTCCTGAATTTATCGGACGTTTGCCAGTCGTTGCAGCGCTTGAAAAATTGACTGCAGATGACTTGGTTCGTATT
TTGACAGAGCCACGAAACGCCTTGGTTAAACAATACCAAACCCTTATGTCTTATGATGGTGTTGAGTTAGAATTTGATGA
CGACGCCTTGCAAGCTATTGCCAATAAAGCTATCGAACGTCGAACAGGGGCGCGTGGTTTGCGTTCTATCATTGAAGAAA
CCATGATGGATGTTATGTTTGAAGTACCAAGCCAAGAAGATGTCACTAAAGTTCGTATCACGAAAGCGACAGTTGACGGA
ACGGAAAAACCGATTTTAGAAATTGCGTCTTAA

Domains

Predicted by InterproScan.

AAA domain (Cdc48 subfamily) (AAA_2)

(110-305)

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(312-391)

ClpX C4-type zinc finger (zf-C4_ClpX)

(12-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpX Streptococcus mutans UA159

87.805

100

0.878
  clpX Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.354

97.805

0.571