Detailed information NTG0767212

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: O5O48_RS00980
• Genome accession: NZ_CP114836
• Coordinates: 209455..210798 (+)
• Length: 447 a.a.
• NCBI ID: WP_269687897.1
• Uniprot ID: -
• Organism: Halopseudomonas sp. MFKK-1
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 204455..215798

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
O5O48_RS00960	-	204612..205604 (+)	993	WP_269687893.1	outer membrane protein assembly factor BamD	-
O5O48_RS00965	-	205844..207475 (-)	1632	WP_269687894.1	NAD+ synthase	-
O5O48_RS00970	-	207604..207843 (+)	240	WP_269687895.1	PP0621 family protein	-
O5O48_RS00975	pilS	207824..209416 (+)	1593	WP_269687896.1	ATP-binding protein	Regulator
O5O48_RS00980	pilR	209455..210798 (+)	1344	WP_269687897.1	sigma-54 dependent transcriptional regulator	Regulator
O5O48_RS00985	thiO	210814..211908 (-)	1095	WP_269687898.1	glycine oxidase ThiO	-
O5O48_RS00990	mqo	212382..213863 (+)	1482	WP_269687899.1	malate dehydrogenase (quinone)	-
O5O48_RS00995	-	213860..214921 (-)	1062	WP_269687900.1	M48 family metallopeptidase	-

Sequence

Protein

• Length: 447 a.a.
• Molecular weight: 49690.86 Da
• Isoelectric Point: 6.0292

>NTDB_id=767212 O5O48_RS00980 WP_269687897.1 209455..210798(+) (pilR) [Halopseudomonas sp. MFKK-1]
MMQPTVLIIDDEPDILELLELTLGRMSLQTRSAKTMGEALNLLQSHHFDLCLTDMRLPDGDGLSIVRHIQQHFTSTPVAM
ITAYGSLDTAISALKAGAFDFLTKPVDLARLRELVSTALRLRDSQTEPGPQAQDPILGISPPIERLRNQIGKLARSQAPL
YISGESGSGKELVARRIHALSPRAEQPFVPVNCGAIPSELMESEFFGHRKGSFSGAVADKPGLFQAANHGTLFLDEVADL
PMAMQVKLLRAIQEKAVRAVGSQHEEAVDVRLLCATHKDLANEVAQGRFRQDLFYRINVIELQVPPLRARREDLPLLVRS
ILGRLAERANRPAPAVTEAGMERLLNYRFPGNVRELENALERAFTLCEGQQIDANDLWLSACPSAAQDDTPDFSQIDHLE
DYLDNIERQAITQALEETRWNKTAAAKRLGLTFRSLRYRLKKLGLDD

Nucleotide

• Length: 1344 bp

>NTDB_id=767212 O5O48_RS00980 WP_269687897.1 209455..210798(+) (pilR) [Halopseudomonas sp. MFKK-1]
ATGATGCAACCCACCGTGCTGATCATCGACGACGAGCCGGACATTCTCGAATTGCTGGAGCTGACCCTCGGGCGCATGTC
GCTGCAAACCCGCAGCGCGAAAACCATGGGCGAAGCCTTGAACCTGCTGCAGTCTCACCACTTTGATCTGTGCCTGACGG
ACATGCGACTGCCTGACGGCGATGGCCTGAGCATCGTACGCCATATCCAGCAACACTTTACCAGCACCCCGGTCGCGATG
ATCACCGCCTATGGCAGTCTGGATACGGCGATCAGCGCACTCAAGGCCGGCGCATTTGACTTCCTGACCAAACCGGTCGA
TCTCGCCCGCCTGCGCGAGCTGGTCTCGACGGCACTGCGCCTGCGAGATTCGCAGACCGAACCCGGCCCCCAGGCACAGG
ACCCGATCCTCGGCATCTCGCCACCAATCGAGCGACTGCGCAACCAGATCGGCAAACTCGCCCGCAGCCAGGCGCCGCTG
TATATCAGCGGCGAGTCCGGCAGCGGCAAGGAACTGGTCGCCCGTCGCATTCACGCGCTCAGCCCCAGAGCCGAACAGCC
CTTTGTACCGGTCAACTGCGGCGCCATACCGTCCGAGTTGATGGAAAGCGAGTTTTTCGGCCACCGCAAAGGCAGCTTTT
CCGGTGCAGTTGCCGACAAGCCGGGCCTGTTCCAGGCCGCCAATCACGGTACTCTGTTTCTCGACGAGGTCGCCGACCTC
CCGATGGCAATGCAGGTCAAACTGCTGCGAGCCATCCAGGAGAAGGCGGTCCGCGCCGTCGGCAGCCAGCACGAGGAAGC
GGTTGACGTACGTCTGTTGTGCGCCACCCACAAGGATCTCGCCAACGAGGTGGCCCAGGGGCGCTTCCGTCAGGACCTGT
TCTACCGCATCAACGTGATCGAACTGCAGGTGCCGCCGCTGCGGGCGCGCCGCGAGGACCTGCCGCTGCTGGTCCGCAGC
ATCCTCGGCCGCCTGGCCGAGCGCGCCAACCGTCCCGCGCCCGCGGTCACCGAGGCCGGTATGGAACGGCTGCTCAATTA
CCGCTTCCCGGGCAACGTACGCGAGCTGGAAAATGCGCTGGAGCGGGCCTTCACCCTGTGCGAAGGCCAGCAGATCGACG
CCAATGACCTGTGGCTCAGCGCCTGCCCAAGTGCGGCCCAGGATGACACTCCCGATTTCAGCCAGATCGACCATCTGGAG
GATTATCTGGACAACATCGAGCGCCAGGCGATCACCCAGGCACTGGAAGAGACCCGCTGGAACAAGACCGCCGCCGCCAA
GCGGCTGGGTCTCACCTTTCGCTCCCTGCGCTACCGCCTGAAGAAGCTGGGCCTGGACGACTGA

Domains

Predicted by InterproScan.

• Bacterial regulatory protein, Fis family (HTH_8) (403-443)

• Sigma-54 interaction domain (Sigma54_activat) (137-303)

• Response regulator receiver domain (Response_reg) (6-115)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	72.646	99.776	0.725
pilR	Acinetobacter baumannii strain A118	49.567	100	0.512