Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrC   Type   Machinery gene
Locus tag   QN080_RS09560 Genome accession   NZ_CP126309
Coordinates   2219775..2221574 (+) Length   599 a.a.
NCBI ID   WP_077085258.1    Uniprot ID   -
Organism   Porphyromonas gingivalis strain LyEC01     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2214775..2226574
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QN080_RS09540 - 2214838..2215653 (-) 816 WP_005874138.1 glycogen/starch synthase -
  QN080_RS09545 - 2215992..2216105 (+) 114 WP_021665634.1 DUF1661 domain-containing protein -
  QN080_RS09555 mnmG 2217864..2219741 (+) 1878 WP_099777712.1 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG -
  QN080_RS09560 uvrC 2219775..2221574 (+) 1800 WP_077085258.1 excinuclease ABC subunit UvrC Machinery gene
  QN080_RS09565 dtd 2221581..2222033 (+) 453 WP_021664500.1 D-aminoacyl-tRNA deacylase -
  QN080_RS09570 - 2222038..2222388 (+) 351 WP_013815278.1 nucleotide pyrophosphohydrolase -
  QN080_RS09575 deoC 2222375..2223244 (+) 870 WP_021665347.1 deoxyribose-phosphate aldolase -
  QN080_RS09580 - 2223285..2223446 (+) 162 WP_021664498.1 hypothetical protein -
  QN080_RS09585 - 2223555..2224529 (-) 975 WP_021664497.1 polyprenyl synthetase family protein -
  QN080_RS09590 - 2224587..2225225 (-) 639 WP_021664496.1 WbqC family protein -
  QN080_RS09595 lepB 2225246..2225872 (-) 627 WP_021662709.1 signal peptidase I -

Sequence

Protein


Download         Length: 599 a.a.        Molecular weight: 69802.52 Da        Isoelectric Point: 9.7071

>NTDB_id=767071 QN080_RS09560 WP_077085258.1 2219775..2221574(+) (uvrC) [Porphyromonas gingivalis strain LyEC01]
MTRDELNIILPTLPEKPGCYQYFDEDGKVIYVGKAKNLRRRVSSYFYKEHADRKTRILVRQIRSIKYIVVDSEGDALLLE
NSLIKEYQPRYNVLLKDGKTYPSIVIKREPFPRIFATRDIKKDGSEYFGPYPGALIAKGMLRLVKEIYPIRTCKLDLREE
KIRQGRYRVCLQYHIKKCKGPCIGNQTSNEYESNVSEIRDLLRGNLHRLVRMYRDRMQVYSEGLRFEEAQICKERIELLE
RYEAKHTVVPRNIDNVDVFSYDEDEHTAYINYMHIEHGGINRVYTLEYRKQIEESKEELLAAAITELRQRFESNAHEIVL
PFDTGWQTGESITTTIPRRGDKRKLLELSEKNVAQYKLDKLKRAEKLNPEQRALHIVHGIQKDLHLDRPPKHIECFDNSN
IQGTSPVAACVVFKMGKPSKKDYRKFHVKTVEGPNDFASMREIISRHYTRLTEENLPLPDLIVVDGGKGQLSAAYETLDK
LGLIGKIPIIGLAERLEEIFFPKDPVPLILDKKSETLKVIQHLRDEAHRFGIGFHRDVRSKKQIQSELDNIKGIGKKTKE
DLLRHFKSVKRIRSAEEEELSALIGRNKAKLLYEGLRKK

Nucleotide


Download         Length: 1800 bp        

>NTDB_id=767071 QN080_RS09560 WP_077085258.1 2219775..2221574(+) (uvrC) [Porphyromonas gingivalis strain LyEC01]
ATGACCCGCGACGAACTGAACATCATCCTCCCTACCCTGCCGGAAAAACCGGGTTGCTACCAGTACTTCGATGAAGATGG
GAAGGTAATCTATGTAGGCAAGGCCAAAAACCTTCGGCGCAGGGTCAGTTCGTATTTTTACAAGGAGCACGCAGACAGGA
AAACCCGCATACTGGTCAGACAGATCAGGAGTATCAAATACATAGTTGTGGACAGCGAAGGGGATGCCCTGCTGCTCGAA
AACTCACTGATCAAGGAGTATCAACCTCGGTATAATGTCCTACTCAAAGATGGGAAGACATACCCCAGCATAGTCATCAA
ACGGGAACCTTTCCCACGTATATTCGCCACACGGGACATCAAAAAGGACGGATCCGAATACTTCGGCCCCTATCCGGGCG
CACTCATTGCCAAAGGGATGCTCCGCCTTGTGAAAGAGATCTACCCGATCCGTACCTGCAAACTGGATCTGAGAGAGGAG
AAAATCCGACAAGGACGGTACCGCGTCTGTCTGCAGTATCACATCAAGAAATGCAAAGGCCCCTGCATCGGCAATCAAAC
TTCGAACGAGTACGAAAGCAATGTATCGGAAATACGCGATCTGCTCCGAGGCAACTTGCACAGGCTTGTACGCATGTATC
GCGACAGGATGCAGGTATACAGCGAAGGACTGCGCTTCGAAGAGGCACAGATATGCAAGGAGAGAATAGAGCTTCTTGAG
CGATACGAAGCCAAGCATACGGTCGTACCGCGTAATATAGACAACGTAGATGTTTTCTCTTACGACGAAGACGAGCACAC
GGCCTATATCAACTACATGCACATAGAGCACGGAGGGATCAATCGTGTGTACACCTTGGAGTACAGAAAGCAGATAGAGG
AATCGAAAGAAGAACTTCTTGCAGCGGCGATAACAGAGCTGAGACAAAGATTCGAAAGCAACGCCCACGAAATCGTTTTG
CCGTTCGACACCGGTTGGCAAACGGGAGAGAGCATCACGACTACGATCCCCCGACGTGGGGACAAACGGAAACTGCTGGA
ATTATCCGAGAAGAACGTAGCTCAATACAAGCTCGACAAACTCAAACGTGCCGAGAAGCTCAATCCCGAGCAACGCGCCC
TACATATCGTCCACGGGATCCAAAAGGATTTGCACTTGGATCGCCCGCCGAAACATATCGAATGCTTCGACAACTCGAAT
ATACAGGGTACGAGTCCGGTGGCAGCCTGCGTTGTTTTCAAAATGGGGAAACCGAGCAAAAAGGATTACCGAAAGTTTCA
CGTGAAAACAGTCGAAGGGCCGAACGACTTCGCCTCCATGAGAGAAATCATCAGTCGGCATTACACCCGCCTGACGGAAG
AGAACTTACCCCTACCCGACCTGATCGTCGTAGATGGAGGGAAAGGACAGCTTAGCGCAGCGTACGAAACATTAGATAAA
CTGGGGCTCATCGGCAAGATACCCATCATAGGATTGGCCGAACGTCTGGAGGAAATCTTTTTCCCGAAGGATCCCGTTCC
GCTGATTTTGGACAAGAAAAGCGAAACGCTCAAGGTCATACAACACCTACGCGACGAAGCACACCGCTTCGGGATCGGGT
TCCACCGCGATGTACGAAGTAAGAAACAAATTCAGAGCGAACTGGACAATATCAAAGGCATCGGTAAGAAAACAAAAGAA
GATCTGCTCCGCCATTTCAAAAGCGTAAAGCGAATACGCTCCGCAGAAGAGGAAGAGCTTAGTGCTCTTATCGGCCGGAA
CAAAGCGAAACTATTATACGAAGGACTCAGAAAGAAATAA

Domains

Predicted by InterProScan.

UvrC RNAse H endonuclease domain (UvrC_RNaseH_dom)

(381-532)

Helix-hairpin-helix domain (HHH_5)

(547-598)

GIY-YIG catalytic domain (GIY-YIG)

(17-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrC Streptococcus pneumoniae R6

38.71

98.331

0.381
  uvrC Streptococcus pneumoniae D39

38.71

98.331

0.381
  uvrC Streptococcus pneumoniae TIGR4

38.37

98.331

0.377