Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   QN080_RS03610 Genome accession   NZ_CP126309
Coordinates   842402..843025 (+) Length   207 a.a.
NCBI ID   WP_021662288.1    Uniprot ID   -
Organism   Porphyromonas gingivalis strain LyEC01     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 837402..848025
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QN080_RS03595 nrdG 839689..840180 (+) 492 WP_004584586.1 anaerobic ribonucleoside-triphosphate reductase activating protein -
  QN080_RS03600 - 840292..840570 (+) 279 WP_004584585.1 HU family DNA-binding protein -
  QN080_RS03605 - 840891..842405 (+) 1515 WP_004584583.1 Rne/Rng family ribonuclease -
  QN080_RS03610 recR 842402..843025 (+) 624 WP_021662288.1 recombination mediator RecR Machinery gene
  QN080_RS03615 - 843032..843559 (+) 528 WP_021662287.1 GNAT family N-acetyltransferase -
  QN080_RS03620 ligA 843547..845556 (+) 2010 WP_284184323.1 NAD-dependent DNA ligase LigA -
  QN080_RS03625 - 845569..846804 (+) 1236 WP_005874743.1 ABC transporter permease -
  QN080_RS03630 - 847111..847380 (-) 270 WP_284184324.1 hypothetical protein -
  QN080_RS03635 - 847622..847795 (-) 174 WP_230456085.1 hypothetical protein -

Sequence

Protein


Download         Length: 207 a.a.        Molecular weight: 23014.34 Da        Isoelectric Point: 5.9289

>NTDB_id=767052 QN080_RS03610 WP_021662288.1 842402..843025(+) (recR) [Porphyromonas gingivalis strain LyEC01]
MIQKYPSRLLEKAIDQFATLPGVGRKTALRLALYLLRQPVENTHQFAAALVDLREHISYCRRCHNISDSGVCTICADLTR
DQSTLCVVENIRDVMAIENTSQYRGLYHVLGGVISPMDGIGPGDLQIDSLVHRVASEQIHEVILALSTTMEGDTTNFFLF
RKLESTGVRVSVIARGIAIGDEIEYADEITLGRSILNRTDFSDSVKF

Nucleotide


Download         Length: 624 bp        

>NTDB_id=767052 QN080_RS03610 WP_021662288.1 842402..843025(+) (recR) [Porphyromonas gingivalis strain LyEC01]
ATGATACAGAAATATCCTTCGCGTCTGCTTGAGAAGGCGATAGACCAATTTGCTACATTGCCGGGTGTAGGGCGCAAGAC
AGCCCTGCGCCTGGCTTTGTACTTATTGCGCCAACCTGTGGAAAATACCCATCAATTTGCAGCAGCCCTTGTAGATCTTC
GGGAACATATTTCCTATTGCAGGCGCTGTCATAATATCAGTGATTCCGGTGTTTGTACTATCTGTGCAGACCTCACTCGG
GATCAGAGTACACTCTGCGTAGTAGAGAATATCCGTGACGTTATGGCTATCGAGAATACCTCACAGTATCGAGGCTTGTA
TCATGTACTCGGTGGAGTCATATCTCCCATGGATGGGATCGGCCCGGGCGATTTGCAAATAGATTCTTTGGTGCATCGAG
TAGCTTCTGAGCAGATTCATGAGGTTATATTGGCTTTGAGTACGACGATGGAGGGCGATACTACCAACTTTTTCCTCTTT
CGCAAGTTGGAGTCTACCGGCGTTCGGGTCAGTGTAATTGCTCGAGGCATTGCTATAGGCGATGAGATCGAATATGCCGA
TGAGATTACCCTCGGTCGTTCTATTCTCAATCGTACCGATTTCTCCGACTCAGTCAAATTCTGA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(83-174)

RecR protein (RecR_ZnF)

(44-81)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

47.739

96.135

0.459
  recR Streptococcus pneumoniae R6

45.178

95.169

0.43
  recR Bacillus subtilis subsp. subtilis str. 168

43.434

95.652

0.415