Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   O4M85_RS26535 Genome accession   NZ_CP114761
Coordinates   5647038..5647595 (+) Length   185 a.a.
NCBI ID   WP_003125211.1    Uniprot ID   A0A6A9K9C7
Organism   Pseudomonas aeruginosa strain NF143349     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5642038..5652595
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O4M85_RS26515 (O4M85_26515) pilR 5643314..5644651 (+) 1338 WP_003094694.1 two-component system response regulator PilR Regulator
  O4M85_RS26520 (O4M85_26520) thiO 5644697..5645791 (-) 1095 WP_088376838.1 glycine oxidase ThiO -
  O4M85_RS26525 (O4M85_26525) - 5645926..5646435 (+) 510 WP_033976381.1 GspH/FimT family pseudopilin -
  O4M85_RS26530 (O4M85_26530) - 5646541..5647047 (+) 507 WP_003134935.1 GspH/FimT family pseudopilin -
  O4M85_RS26535 (O4M85_26535) pilV 5647038..5647595 (+) 558 WP_003125211.1 type 4a pilus minor pilin PilV Machinery gene
  O4M85_RS26540 (O4M85_26540) pilW 5647592..5648416 (+) 825 WP_033976380.1 type 4a pilus minor pilin PilW -
  O4M85_RS26545 (O4M85_26545) pilX 5648413..5649000 (+) 588 WP_033972921.1 type 4a pilus minor pilin PilX -
  O4M85_RS26550 (O4M85_26550) pilY1 5649012..5652497 (+) 3486 WP_088376618.1 type 4a pilus biogenesis protein PilY1 -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 20087.19 Da        Isoelectric Point: 8.2171

>NTDB_id=766961 O4M85_RS26535 WP_003125211.1 5647038..5647595(+) (pilV) [Pseudomonas aeruginosa strain NF143349]
MLLKSRHRSLYQSGFSMIEVLVALLLISIGVLGMIAMQGKTIQYTADSVERNKAAMLGSNLLESMRASPKALYDVKDQMA
TQSDFFKAKGSAFPTAPSSCTPLPDAIKDRLGCWAEQVKNELPGAGDLLKSDYYICRSSKPGDCDGKGSMLEIRLAWRGK
QGACVNAADSSADTSLCYYTLRVEP

Nucleotide


Download         Length: 558 bp        

>NTDB_id=766961 O4M85_RS26535 WP_003125211.1 5647038..5647595(+) (pilV) [Pseudomonas aeruginosa strain NF143349]
ATGCTATTGAAATCGCGACACAGGTCGCTGTACCAATCCGGCTTCAGCATGATCGAAGTGCTGGTCGCCCTGCTGCTGAT
CAGCATCGGCGTGCTGGGCATGATCGCCATGCAGGGCAAGACCATCCAGTACACCGCCGACTCGGTCGAGCGCAACAAGG
CAGCCATGCTCGGCAGCAACCTGCTGGAAAGCATGCGGGCGAGCCCGAAGGCGCTGTACGACGTCAAGGACCAGATGGCC
ACGCAATCCGACTTCTTCAAGGCCAAGGGGTCGGCGTTCCCCACCGCGCCGTCCTCCTGTACGCCATTGCCCGACGCGAT
CAAGGACCGCCTGGGATGCTGGGCGGAACAGGTGAAGAACGAACTGCCAGGCGCTGGCGACCTGCTGAAGAGCGACTACT
ACATCTGCCGCAGCTCGAAGCCGGGCGACTGCGACGGCAAGGGCTCCATGCTGGAAATCCGCCTGGCCTGGCGCGGCAAG
CAAGGCGCCTGCGTCAACGCCGCCGACAGCAGTGCCGATACCTCCCTCTGCTACTACACCCTCAGGGTCGAGCCATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(12-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6A9K9C7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

98.919

100

0.989