Detailed information    

insolico Bioinformatically predicted

Overview

Name   tsaP   Type   Machinery gene
Locus tag   O4M77_RS13645 Genome accession   NZ_CP114606
Coordinates   2872103..2873257 (+) Length   384 a.a.
NCBI ID   WP_104426934.1    Uniprot ID   -
Organism   Acinetobacter sp. YWS30-1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2867103..2878257
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O4M77_RS13630 (O4M77_13620) - 2868790..2870877 (-) 2088 WP_323713580.1 TonB-dependent copper receptor -
  O4M77_RS13635 (O4M77_13625) - 2870949..2871359 (-) 411 WP_005233427.1 DUF2946 family protein -
  O4M77_RS13640 (O4M77_13630) def 2871452..2871982 (-) 531 WP_004780730.1 peptide deformylase -
  O4M77_RS13645 (O4M77_13635) tsaP 2872103..2873257 (+) 1155 WP_104426934.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  O4M77_RS13650 (O4M77_13640) dprA 2873315..2874454 (+) 1140 WP_323713581.1 DNA-processing protein DprA Machinery gene
  O4M77_RS13655 (O4M77_13645) - 2874495..2875064 (+) 570 WP_034171542.1 L-threonylcarbamoyladenylate synthase -
  O4M77_RS13660 (O4M77_13650) - 2875461..2876372 (-) 912 WP_313660608.1 DMT family transporter -
  O4M77_RS13665 (O4M77_13655) - 2876564..2877109 (+) 546 WP_323713582.1 glutathione peroxidase -
  O4M77_RS13670 (O4M77_13660) - 2877519..2878094 (+) 576 WP_179992710.1 hypothetical protein -

Sequence

Protein


Download         Length: 384 a.a.        Molecular weight: 42010.20 Da        Isoelectric Point: 9.0542

>NTDB_id=766857 O4M77_RS13645 WP_104426934.1 2872103..2873257(+) (tsaP) [Acinetobacter sp. YWS30-1]
MKKVLKGMPFFSALGLKNQMLALAVCVGVSMGTMYSAEAAPARNVNPPALKASAPNVYVVKKGDTLWDISKRFLKNPVRW
PEIWASNKHVKNPHWIFPGDRLLMCDYQGRPIIGKDEGDGCEGIISRYIGSTSLQPQVRVESLNNTIPVIPLAHIQQWLE
RYTIVAADSVQGTPYILGTADQRVLAGKGQKVYARGNGLVVGQRYAVYREADPYVFTDANGKKYTAALELQQVASGIAVR
GEGDVTTLELTDSYNAEVRRGDRVLPEYDPMLPTLFYPVNAENTVAGGQIVRVLGSIGTAARHSVVTIDRGTAHGVQTGH
VFSVNQKGEVVTDPKTKERVQLPGERIGNVMVFKTFDQLSYAYVLESELPIKVGANIQAPLLDE

Nucleotide


Download         Length: 1155 bp        

>NTDB_id=766857 O4M77_RS13645 WP_104426934.1 2872103..2873257(+) (tsaP) [Acinetobacter sp. YWS30-1]
ATGAAAAAGGTTTTGAAGGGCATGCCATTTTTTAGTGCCTTGGGGTTAAAAAATCAAATGCTCGCACTGGCAGTTTGTGT
CGGAGTGAGTATGGGGACAATGTATTCAGCCGAGGCAGCTCCTGCCCGCAACGTCAATCCACCCGCTTTAAAAGCCAGTG
CGCCTAATGTCTACGTGGTCAAAAAAGGCGATACATTGTGGGATATTTCAAAACGTTTCTTAAAAAATCCGGTGCGTTGG
CCAGAAATCTGGGCCAGTAACAAGCACGTGAAAAATCCACATTGGATTTTCCCGGGTGACCGCCTGTTGATGTGTGACTA
TCAAGGTCGTCCAATCATTGGTAAAGACGAAGGTGATGGCTGTGAAGGCATCATCAGTCGTTATATTGGCAGTACTTCGC
TACAGCCACAGGTTCGCGTTGAATCTTTAAATAATACGATTCCAGTGATTCCATTAGCGCACATCCAGCAATGGCTGGAA
CGCTATACCATAGTGGCAGCGGATTCAGTTCAGGGTACGCCTTACATTCTCGGCACTGCAGACCAGCGCGTACTGGCAGG
TAAAGGTCAGAAAGTTTATGCCCGCGGTAATGGTCTGGTGGTTGGCCAGCGTTATGCGGTATATCGTGAAGCAGACCCTT
ATGTCTTTACCGATGCCAATGGCAAGAAATACACGGCTGCTCTAGAGTTGCAACAGGTTGCTTCCGGAATTGCAGTACGT
GGCGAAGGTGATGTCACCACGCTGGAATTAACAGATAGCTATAATGCCGAAGTGCGTCGCGGTGACCGTGTATTGCCTGA
ATACGATCCGATGTTGCCTACCCTGTTCTATCCAGTGAATGCAGAAAATACGGTTGCTGGTGGTCAGATTGTGCGTGTAC
TGGGTTCAATTGGTACTGCTGCGCGTCATAGCGTCGTGACGATTGACCGTGGTACGGCACATGGGGTTCAGACTGGTCAT
GTCTTCAGCGTAAACCAGAAAGGTGAAGTCGTGACTGATCCGAAAACCAAGGAACGCGTACAGCTTCCAGGTGAGCGCAT
TGGCAATGTGATGGTCTTTAAAACTTTTGATCAGCTCAGCTATGCTTATGTGCTGGAAAGTGAGTTACCTATCAAGGTGG
GTGCCAATATTCAAGCGCCATTGTTAGATGAATAA

Domains

Predicted by InterproScan.

LysM domain (LysM)

(58-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tsaP Acinetobacter baumannii D1279779

67.532

100

0.677