Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   O4M77_RS13405 Genome accession   NZ_CP114606
Coordinates   2816739..2818304 (+) Length   521 a.a.
NCBI ID   WP_180016630.1    Uniprot ID   -
Organism   Acinetobacter sp. YWS30-1     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 2811739..2823304
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O4M77_RS13385 (O4M77_13375) - 2812248..2813552 (+) 1305 WP_005233480.1 homoserine dehydrogenase -
  O4M77_RS13390 (O4M77_13380) thrC 2813608..2814747 (+) 1140 WP_323713569.1 threonine synthase -
  O4M77_RS13395 (O4M77_13385) - 2814807..2815859 (-) 1053 WP_034703413.1 serine hydrolase -
  O4M77_RS13400 (O4M77_13390) - 2816076..2816711 (+) 636 WP_005233474.1 response regulator -
  O4M77_RS13405 (O4M77_13395) pilS 2816739..2818304 (+) 1566 WP_180016630.1 sensor histidine kinase Regulator
  O4M77_RS13410 (O4M77_13400) pilR 2818322..2819743 (+) 1422 WP_373684718.1 sigma-54-dependent transcriptional regulator Regulator
  O4M77_RS13415 (O4M77_13405) - 2819744..2820916 (-) 1173 WP_034703419.1 S41 family peptidase -
  O4M77_RS13420 (O4M77_13410) gpmI 2820940..2822487 (-) 1548 WP_323713570.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -

Sequence

Protein


Download         Length: 521 a.a.        Molecular weight: 59729.80 Da        Isoelectric Point: 6.3704

>NTDB_id=766854 O4M77_RS13405 WP_180016630.1 2816739..2818304(+) (pilS) [Acinetobacter sp. YWS30-1]
MAQTSSYSELNQYHLGLWYSAYRLIISTGLLLIFLLTYPDMTTDYQYPKLYHYALMISVAVNTVQLFTLRWVKRLIQPQF
ILIFASDVFFLSLLTLASQGPNVHLGLIFVITIFSASLLLDAKKALIITLIAVISIIYQHFIGSIFAFSSLTNIGNSALL
AFLFFVVYGSGQIAVRRFQILENLNFSQSLELYRLQNINRYILEQIETGYLVLDENYHVVLSNPAACHLLGIEPMYAHER
FSLYQSQNDLFELIRFENLENGERFQFESQQSRYNIHVQVQKLIVPHQTLTLLVLQDARKLNQQVQQLKLAALGQLSASI
AHEIRNPLAAIVQANDLYLDSEPEQQQVLHQMISRQATRIDRIIQDTLNMVKNKETHPVVIQLNEFIPLFIQEDLADVAD
QIQFNIDVPLAIQFDEAQLRQILINLIRNAIRHNSPDSPHIQLNIHPYEHKVWIDVRDFGSGVATHDQELLFKPFFSTSI
HGTGLGLYLSHSFCEANQAQLNYISQEQGACFRISCQRVTA

Nucleotide


Download         Length: 1566 bp        

>NTDB_id=766854 O4M77_RS13405 WP_180016630.1 2816739..2818304(+) (pilS) [Acinetobacter sp. YWS30-1]
ATGGCGCAAACATCCAGTTATTCTGAACTGAATCAATATCATCTGGGCCTATGGTATAGCGCCTACCGCCTGATTATCAG
CACGGGTCTGTTGCTGATTTTTCTGCTGACTTATCCTGATATGACTACAGATTATCAGTATCCTAAACTCTATCACTATG
CCTTAATGATTAGCGTCGCCGTCAATACTGTGCAGCTGTTTACGCTGAGATGGGTAAAGCGCCTGATTCAGCCGCAGTTC
ATTCTGATTTTTGCCAGCGATGTCTTTTTTCTCAGTTTATTGACCTTGGCCAGTCAGGGTCCAAACGTGCATCTCGGACT
GATTTTTGTTATTACCATTTTTTCAGCCTCATTATTGCTCGATGCCAAGAAGGCCCTGATCATCACCCTGATTGCGGTGA
TTAGTATCATCTACCAGCATTTTATCGGCAGTATTTTTGCCTTTTCCTCGCTTACCAATATCGGGAATAGTGCCCTGCTG
GCCTTTTTGTTTTTTGTCGTCTATGGCTCAGGACAAATTGCGGTACGGCGCTTTCAGATTCTGGAAAACCTGAATTTTTC
TCAATCGCTGGAACTATATCGCTTACAGAATATTAACCGCTATATTCTGGAACAGATTGAAACCGGCTATCTGGTTTTAG
ATGAGAATTACCATGTGGTGCTCAGTAATCCGGCTGCCTGTCATCTGCTCGGCATTGAGCCAATGTATGCCCATGAAAGA
TTTTCGTTATACCAATCTCAAAATGACCTGTTTGAACTGATCCGTTTTGAAAATCTGGAAAATGGCGAGCGGTTTCAATT
TGAATCCCAGCAGAGTCGTTATAATATTCACGTGCAGGTACAAAAGCTGATTGTGCCGCACCAGACTCTGACGCTCCTCG
TGCTGCAAGATGCCCGCAAACTTAATCAGCAGGTGCAACAGTTAAAGCTTGCTGCTCTAGGCCAGCTTTCCGCCAGTATT
GCCCATGAAATTCGCAATCCTCTGGCTGCCATTGTACAGGCCAATGATCTTTATCTCGATTCTGAACCTGAACAGCAACA
AGTTCTGCATCAGATGATTAGCCGACAGGCCACCCGGATTGACCGGATTATTCAGGACACCCTGAATATGGTGAAGAATA
AAGAAACCCATCCAGTCGTAATTCAGCTGAATGAATTTATACCACTGTTTATTCAGGAAGATTTAGCAGATGTGGCGGAC
CAGATTCAATTTAATATTGATGTACCACTGGCAATTCAGTTTGATGAGGCCCAGTTACGTCAGATTCTAATTAACCTGAT
TCGTAATGCTATCCGTCATAATTCACCGGATTCACCCCATATTCAATTGAATATTCACCCATATGAACATAAGGTATGGA
TAGATGTCCGGGATTTTGGCTCTGGTGTTGCCACCCATGATCAGGAATTATTATTTAAACCTTTTTTCAGCACGTCTATC
CATGGAACGGGACTCGGACTATATTTATCACATAGTTTTTGTGAAGCCAATCAGGCACAACTCAACTACATTTCACAAGA
ACAGGGCGCATGCTTTCGGATTAGCTGTCAACGTGTGACAGCATAA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(312-373)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(415-515)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Acinetobacter baumannii strain A118

58.218

96.929

0.564