Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   O4M77_RS12470 Genome accession   NZ_CP114606
Coordinates   2626943..2627578 (+) Length   211 a.a.
NCBI ID   WP_166135920.1    Uniprot ID   -
Organism   Acinetobacter sp. YWS30-1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2621943..2632578
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O4M77_RS12455 (O4M77_12445) - 2622774..2623760 (-) 987 WP_096911503.1 IS110 family transposase -
  O4M77_RS12460 (O4M77_12450) - 2624065..2624877 (-) 813 WP_166135926.1 NAD-dependent epimerase/dehydratase family protein -
  O4M77_RS12465 (O4M77_12455) recG 2624911..2626956 (+) 2046 WP_166135923.1 ATP-dependent DNA helicase RecG -
  O4M77_RS12470 (O4M77_12460) comF 2626943..2627578 (+) 636 WP_166135920.1 ComF family protein Machinery gene
  O4M77_RS12475 (O4M77_12465) - 2627580..2627981 (-) 402 WP_166135917.1 NUDIX hydrolase -
  O4M77_RS12480 (O4M77_12470) - 2628010..2628600 (-) 591 WP_034701503.1 TIGR00730 family Rossman fold protein -
  O4M77_RS12485 (O4M77_12475) - 2628754..2629767 (+) 1014 WP_159122636.1 CorA family divalent cation transporter -
  O4M77_RS12490 (O4M77_12480) - 2630113..2630403 (-) 291 WP_166135914.1 STAS domain-containing protein -
  O4M77_RS12495 (O4M77_12485) - 2630416..2631051 (-) 636 WP_004786965.1 MlaC/ttg2D family ABC transporter substrate-binding protein -
  O4M77_RS12500 (O4M77_12490) - 2631070..2631747 (-) 678 WP_166135911.1 outer membrane lipid asymmetry maintenance protein MlaD -
  O4M77_RS12505 (O4M77_12495) mlaE 2631747..2632526 (-) 780 WP_004786970.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24476.70 Da        Isoelectric Point: 9.4183

>NTDB_id=766843 O4M77_RS12470 WP_166135920.1 2626943..2627578(+) (comF) [Acinetobacter sp. YWS30-1]
MPMFKLLQQGKHWLNRLQPCQLCQTDYQNLHSVCQDCWQQLPWAHQTIQRQEMQFQVACDYAYPMDRLIQLFKYEQKLHL
EPLLAGALLTLKFPKVSAVVPMPISTERLVERGYNQSLLLAKHVAKHLQVPVWQPIERLKQHSQKGLSRLERIEDIEAQF
RVTISSKVRYRKVLIIDDVVTTGSSIRALSQQLEKLGCQQIYAACLAGAKL

Nucleotide


Download         Length: 636 bp        

>NTDB_id=766843 O4M77_RS12470 WP_166135920.1 2626943..2627578(+) (comF) [Acinetobacter sp. YWS30-1]
ATGCCTATGTTTAAGCTGCTCCAACAGGGAAAACACTGGCTGAACCGTTTACAACCTTGTCAGCTGTGCCAGACAGATTA
TCAAAACCTGCATTCTGTCTGTCAGGATTGCTGGCAACAGTTACCTTGGGCACATCAGACTATTCAGCGTCAGGAAATGC
AGTTTCAGGTGGCTTGTGACTATGCCTACCCGATGGATCGCCTGATTCAATTATTTAAATATGAGCAGAAGCTGCATCTG
GAACCATTATTGGCAGGTGCATTACTAACCTTAAAATTTCCTAAAGTCAGTGCAGTGGTTCCTATGCCGATTTCAACCGA
ACGACTGGTTGAACGTGGCTATAATCAATCTTTGTTGCTGGCCAAGCATGTAGCTAAACACTTGCAAGTTCCCGTCTGGC
AACCAATTGAACGACTCAAGCAACATTCACAAAAAGGCTTAAGCCGTCTGGAACGTATCGAAGATATTGAAGCCCAGTTC
AGGGTCACTATCTCTTCAAAAGTCCGTTATCGTAAGGTTTTAATTATTGATGATGTGGTTACGACTGGCAGCTCAATTCG
AGCTTTGAGCCAGCAACTGGAAAAACTGGGCTGTCAGCAGATTTATGCCGCCTGTCTGGCGGGAGCCAAACTTTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(117-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

60.386

98.104

0.592
  comF Acinetobacter baumannii D1279779

59.903

98.104

0.588