Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   O4J62_RS11860 Genome accession   NZ_CP114601
Coordinates   2468247..2468672 (-) Length   141 a.a.
NCBI ID   WP_323712552.1    Uniprot ID   -
Organism   Acinetobacter towneri strain TT1-3_T     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2463247..2473672
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O4J62_RS11830 (O4J62_11830) - 2463803..2464720 (+) 918 WP_225531238.1 esterase/lipase family protein -
  O4J62_RS11835 (O4J62_11835) - 2464897..2465865 (+) 969 WP_323712550.1 triacylglycerol lipase -
  O4J62_RS11840 (O4J62_11840) rplS 2465933..2466304 (-) 372 WP_004974529.1 50S ribosomal protein L19 -
  O4J62_RS11845 (O4J62_11845) trmD 2466478..2467227 (-) 750 WP_286380684.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  O4J62_RS11850 (O4J62_11850) rimM 2467270..2467818 (-) 549 WP_323712551.1 ribosome maturation factor RimM -
  O4J62_RS11855 (O4J62_11855) rpsP 2467847..2468104 (-) 258 WP_004974526.1 30S ribosomal protein S16 -
  O4J62_RS11860 (O4J62_11860) comF 2468247..2468672 (-) 426 WP_323712552.1 type IV pilin protein Machinery gene
  O4J62_RS11865 (O4J62_11865) - 2468672..2469364 (-) 693 WP_323712553.1 type IV pilin protein -
  O4J62_RS11870 (O4J62_11870) - 2469375..2473496 (-) 4122 WP_323712554.1 hypothetical protein -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15510.56 Da        Isoelectric Point: 9.2457

>NTDB_id=766813 O4J62_RS11860 WP_323712552.1 2468247..2468672(-) (comF) [Acinetobacter towneri strain TT1-3_T]
MNKNKGFTLIELMIVVAIIAVLAAIAYPSYTQYKIRTNRADVQSEMMNIAQRLQSYYVINHNYTSATLDNGTTSKDYPIS
NPVYSITLVSNDQTYTLTAQPKSGTVQAGNGNVILDSQGRKCWTKTTTACVPSATSNWDGK

Nucleotide


Download         Length: 426 bp        

>NTDB_id=766813 O4J62_RS11860 WP_323712552.1 2468247..2468672(-) (comF) [Acinetobacter towneri strain TT1-3_T]
ATGAATAAAAATAAAGGATTTACCCTAATCGAGTTAATGATTGTTGTGGCGATAATTGCTGTTTTGGCGGCGATTGCTTA
CCCTTCTTATACTCAATATAAAATTCGTACTAACCGTGCTGATGTACAAAGTGAAATGATGAATATTGCACAGCGCTTAC
AAAGTTACTACGTGATCAATCATAATTACACGAGTGCAACCCTAGATAACGGCACAACCAGCAAAGATTATCCAATATCT
AATCCTGTTTATAGCATTACATTGGTTTCGAATGATCAAACTTATACATTAACTGCACAACCTAAATCAGGTACTGTTCA
GGCAGGTAATGGAAATGTAATTTTGGATAGTCAGGGAAGGAAATGTTGGACTAAAACAACTACAGCTTGCGTTCCTTCAG
CCACCTCAAACTGGGACGGCAAATAA

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(28-107)

Prokaryotic N-terminal methylation motif (N_methyl)

(1-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baylyi ADP1

52.778

100

0.539
  pilE Acinetobacter baumannii D1279779

50.735

96.454

0.489
  pilA2 Legionella pneumophila strain ERS1305867

40

92.199

0.369
  pilA2 Legionella pneumophila str. Paris

39.231

92.199

0.362