Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   O4J62_RS11580 Genome accession   NZ_CP114601
Coordinates   2416842..2417477 (+) Length   211 a.a.
NCBI ID   WP_179989136.1    Uniprot ID   -
Organism   Acinetobacter towneri strain TT1-3_T     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2411842..2422477
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O4J62_RS11570 (O4J62_11570) - 2413920..2414741 (-) 822 WP_323712537.1 NAD(P)H-binding protein -
  O4J62_RS11575 (O4J62_11575) recG 2414778..2416823 (+) 2046 WP_167846341.1 ATP-dependent DNA helicase RecG -
  O4J62_RS11580 (O4J62_11580) comF 2416842..2417477 (+) 636 WP_179989136.1 ComF family protein Machinery gene
  O4J62_RS11585 (O4J62_11585) - 2417552..2417962 (-) 411 WP_004974664.1 NUDIX hydrolase -
  O4J62_RS11590 (O4J62_11590) - 2417964..2418566 (-) 603 WP_026438479.1 TIGR00730 family Rossman fold protein -
  O4J62_RS11595 (O4J62_11595) - 2418721..2419734 (+) 1014 WP_096901036.1 CorA family divalent cation transporter -
  O4J62_RS11600 (O4J62_11600) - 2419780..2420253 (-) 474 Protein_2227 transposase -
  O4J62_RS11605 (O4J62_11605) - 2420242..2420382 (+) 141 Protein_2228 transposase domain-containing protein -
  O4J62_RS11610 (O4J62_11610) - 2420480..2420767 (-) 288 WP_154320296.1 lipid asymmetry maintenance protein MlaB -
  O4J62_RS11615 (O4J62_11615) - 2420780..2421415 (-) 636 WP_004974651.1 phospholipid-binding protein MlaC -
  O4J62_RS11620 (O4J62_11620) - 2421431..2422108 (-) 678 WP_096901228.1 outer membrane lipid asymmetry maintenance protein MlaD -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24554.62 Da        Isoelectric Point: 9.7066

>NTDB_id=766812 O4J62_RS11580 WP_179989136.1 2416842..2417477(+) (comF) [Acinetobacter towneri strain TT1-3_T]
MTQPINLLQCGIQWLRQLQPCQLCHSDTQWQHSVCQTCWQQLPWRSQAVQRQEMQIQVTFDYHYPINRIIQQFKYEQQLH
YQLLLVGALKQLSYPKIQAIVPMPISTARLTERGYNQSLLLAKGLARHLNVPIWQPVTRLQQHAQKGLSRLERLEDIQQQ
FQIQAAPKIRFRRVLIVDDVVTTGSSIHALKQQLLKLGCQKVEAVCLASAE

Nucleotide


Download         Length: 636 bp        

>NTDB_id=766812 O4J62_RS11580 WP_179989136.1 2416842..2417477(+) (comF) [Acinetobacter towneri strain TT1-3_T]
ATGACTCAGCCGATCAATCTACTACAATGCGGCATACAATGGCTGCGCCAACTGCAACCGTGTCAGCTCTGCCATAGCGA
CACGCAATGGCAACATTCGGTCTGTCAAACCTGTTGGCAACAATTGCCGTGGCGTAGCCAAGCGGTACAACGACAAGAAA
TGCAGATTCAAGTCACTTTTGATTATCACTATCCAATTAATCGCATCATTCAACAATTTAAATATGAACAGCAGTTACAT
TACCAACTGCTTTTAGTAGGCGCGCTAAAACAACTGTCTTATCCTAAAATCCAAGCCATTGTACCGATGCCAATTTCCAC
TGCCCGCTTGACTGAACGCGGCTACAATCAATCTTTATTGTTGGCAAAAGGACTAGCGCGGCATTTAAATGTCCCGATTT
GGCAACCTGTGACCCGCTTACAACAGCACGCGCAAAAAGGCTTAAGTCGCTTAGAACGATTGGAAGACATCCAACAGCAA
TTTCAAATTCAGGCTGCGCCTAAAATCCGTTTTCGTCGGGTTTTAATTGTGGATGATGTGGTCACGACGGGCAGTTCAAT
TCATGCACTCAAACAGCAGTTGCTCAAGCTCGGCTGTCAAAAAGTCGAGGCGGTTTGTCTGGCCAGTGCTGAATAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(118-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

61.307

94.313

0.578
  comF Acinetobacter baumannii D1279779

61.14

91.469

0.559