Detailed information    

insolico Bioinformatically predicted

Overview

Name   tsaP   Type   Machinery gene
Locus tag   O4J62_RS00680 Genome accession   NZ_CP114601
Coordinates   154799..155956 (-) Length   385 a.a.
NCBI ID   WP_323712636.1    Uniprot ID   -
Organism   Acinetobacter towneri strain TT1-3_T     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 149799..160956
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O4J62_RS00655 (O4J62_00655) - 150428..151336 (+) 909 WP_096902732.1 DMT family transporter -
  O4J62_RS00660 (O4J62_00660) - 151421..151816 (-) 396 WP_323712634.1 hypothetical protein -
  O4J62_RS00665 (O4J62_00665) - 151847..152905 (+) 1059 WP_323712635.1 transposase -
  O4J62_RS00670 (O4J62_00670) - 152940..153509 (-) 570 WP_004970120.1 L-threonylcarbamoyladenylate synthase -
  O4J62_RS00675 (O4J62_00675) dprA 153558..154781 (-) 1224 WP_004970117.1 DNA-processing protein DprA Machinery gene
  O4J62_RS00680 (O4J62_00680) tsaP 154799..155956 (-) 1158 WP_323712636.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  O4J62_RS00685 (O4J62_00685) def 156076..156606 (+) 531 WP_019837182.1 peptide deformylase -
  O4J62_RS00690 (O4J62_00690) - 156722..157156 (+) 435 WP_154321168.1 DUF2946 family protein -
  O4J62_RS00695 (O4J62_00695) - 157220..159250 (+) 2031 WP_323712637.1 TonB-dependent copper receptor -

Sequence

Protein


Download         Length: 385 a.a.        Molecular weight: 42166.37 Da        Isoelectric Point: 9.0905

>NTDB_id=766784 O4J62_RS00680 WP_323712636.1 154799..155956(-) (tsaP) [Acinetobacter towneri strain TT1-3_T]
MKKVLTDTSSFRVLGFKKQVLALAVCLTVGLSAISVAEAAPARNINPPALKASAPNVYVVKKGDTLWDISKKFLNNPLRW
PEIWASNRHVKNPHWIFPGDRLLMCTYEGRPIIGKDEGDGCEGIIRRYAGKSTNLQPQIRVESLNNTIPVILLDYIKHWL
ERSSIIAADALQGTPYILGTSDQRVLAAKGQSVYARGAGLEVGQRYGVYREGEPYMLTDANGQKFNAGIELTQVAAGIAV
RGENDITTLELTDTYNAEVRRGDRVLPIYDPMLPTLFYPTHAENVSTGGQVLRVMGSIGTAAKHSVVAIDRGTLHGVQSG
HVFSVAQKGEVVTDPKTKERVQLPGERIGNIMVFKSFDHISYAYVLDSELPIKVGASLQAPRMDD

Nucleotide


Download         Length: 1158 bp        

>NTDB_id=766784 O4J62_RS00680 WP_323712636.1 154799..155956(-) (tsaP) [Acinetobacter towneri strain TT1-3_T]
ATGAAAAAGGTTTTGACAGACACATCCTCTTTTCGTGTCTTGGGGTTTAAAAAGCAAGTTTTAGCACTCGCGGTATGTCT
CACAGTGGGACTTAGTGCGATCAGTGTGGCTGAAGCAGCACCTGCACGAAACATCAATCCGCCTGCCTTAAAAGCCAGCG
CACCAAATGTGTATGTGGTAAAAAAAGGCGATACCTTATGGGATATTTCCAAAAAATTCCTGAACAATCCATTACGTTGG
CCTGAAATTTGGGCAAGTAACCGTCACGTAAAAAATCCTCACTGGATTTTCCCGGGTGACCGTTTATTAATGTGTACCTA
TGAAGGTCGTCCAATTATTGGTAAAGATGAAGGCGATGGCTGTGAAGGTATTATCCGTCGTTATGCAGGCAAGAGCACCA
ATTTACAGCCGCAAATTCGCGTGGAATCTTTAAATAATACCATTCCTGTGATTCTACTTGACTATATCAAACACTGGTTA
GAGCGCAGCAGCATTATTGCCGCAGATGCGTTACAAGGTACACCGTATATTTTGGGTACTTCTGATCAACGTGTTTTAGC
CGCTAAAGGTCAAAGTGTGTATGCGCGTGGTGCAGGTCTGGAAGTAGGTCAACGCTACGGTGTATATCGTGAAGGCGAAC
CGTACATGCTGACCGATGCCAATGGTCAAAAATTCAATGCAGGGATTGAACTCACTCAAGTTGCTGCAGGTATTGCAGTA
CGTGGTGAAAATGACATCACCACACTTGAATTGACCGATACCTACAATGCCGAAGTGCGTCGTGGTGATCGCGTCTTACC
AATTTATGACCCAATGCTGCCAACCTTGTTCTACCCAACGCATGCTGAAAATGTCAGCACAGGTGGTCAGGTGCTACGTG
TGATGGGCTCGATTGGTACCGCAGCAAAACACAGTGTTGTGGCGATTGATCGCGGGACATTACATGGCGTGCAATCTGGT
CATGTGTTTAGCGTAGCGCAAAAAGGTGAAGTGGTCACCGACCCGAAAACCAAAGAACGTGTTCAGCTTCCAGGCGAACG
TATTGGCAATATCATGGTCTTCAAGAGCTTTGACCACATTAGCTATGCCTATGTTTTAGACAGTGAATTACCAATTAAAG
TCGGTGCGAGCTTACAAGCACCACGAATGGACGACTAA

Domains

Predicted by InterproScan.

LysM domain (LysM)

(58-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tsaP Acinetobacter baumannii D1279779

64.416

100

0.644