Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   LpnA194_RS13660 Genome accession   NZ_CP114578
Coordinates   3064138..3064797 (-) Length   219 a.a.
NCBI ID   WP_011947563.1    Uniprot ID   -
Organism   Legionella pneumophila strain A194     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 3059138..3069797
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LpnA194_RS13645 (LpnA194_02741) - 3060082..3060741 (+) 660 WP_011947560.1 hypothetical protein -
  LpnA194_RS13650 (LpnA194_02742) lcl 3060909..3062246 (+) 1338 WP_040164635.1 collagen-like adhesin Lcl -
  LpnA194_RS13655 (LpnA194_02743) uvrC 3062270..3064126 (-) 1857 WP_011947562.1 excinuclease ABC subunit UvrC -
  LpnA194_RS13660 (LpnA194_02744) letA 3064138..3064797 (-) 660 WP_011947563.1 two-component system response regulator LetA Regulator
  LpnA194_RS13665 (LpnA194_02745) phhA 3064922..3065740 (-) 819 WP_011947564.1 phenylalanine 4-monooxygenase -
  LpnA194_RS13670 (LpnA194_02746) - 3066180..3067277 (+) 1098 WP_040146562.1 competence/damage-inducible protein A -
  LpnA194_RS13675 (LpnA194_02747) cgtA 3067236..3068261 (-) 1026 WP_027223998.1 Obg family GTPase CgtA -
  LpnA194_RS13680 (LpnA194_02748) rpmA 3068476..3068754 (-) 279 WP_010948350.1 50S ribosomal protein L27 -
  LpnA194_RS13685 (LpnA194_02749) rplU 3068767..3069078 (-) 312 WP_010948351.1 50S ribosomal protein L21 -

Sequence

Protein


Download         Length: 219 a.a.        Molecular weight: 24566.53 Da        Isoelectric Point: 5.1572

>NTDB_id=766519 LpnA194_RS13660 WP_011947563.1 3064138..3064797(-) (letA) [Legionella pneumophila strain A194]
MIKVLIVDDHALVRMGIRRLLEDMSDVDVVADAESGEQALAYVKTHSPDVVLLDMKMPGIDGWEVTRRLKKTNPNIKVIA
VTAICSDPLPTRVLQLGAMGYLTKESGAEEMAAAIRKVAKGEKYLSAEIAQKMAINSLQEPQDSPFDLLSEREMQVMLMI
TSGMNVQDIADRLFLSSKTINGYRYRMFEKLGIKNDVELTYLAMKHRIIEHPNDLSQDD

Nucleotide


Download         Length: 660 bp        

>NTDB_id=766519 LpnA194_RS13660 WP_011947563.1 3064138..3064797(-) (letA) [Legionella pneumophila strain A194]
TTGATTAAAGTATTAATTGTTGATGACCATGCATTGGTTAGAATGGGCATTCGACGATTGCTTGAAGATATGTCGGATGT
TGATGTGGTTGCAGATGCTGAAAGTGGTGAGCAGGCTTTAGCTTATGTGAAAACCCACTCCCCTGATGTCGTATTATTAG
ACATGAAAATGCCTGGGATAGATGGGTGGGAAGTGACGCGTCGCTTAAAAAAAACAAACCCAAATATTAAAGTCATAGCC
GTTACAGCTATTTGCTCAGATCCTCTCCCTACTCGAGTATTGCAATTAGGTGCTATGGGATACCTTACTAAAGAATCAGG
GGCTGAAGAAATGGCTGCTGCAATTCGTAAAGTGGCTAAAGGTGAGAAATATCTTAGTGCCGAGATTGCACAAAAAATGG
CAATTAATAGTCTTCAGGAGCCTCAGGATTCCCCCTTTGATTTATTGTCTGAAAGAGAAATGCAAGTCATGTTGATGATT
ACGAGCGGCATGAATGTACAAGACATTGCTGATAGATTGTTTTTAAGTAGTAAAACCATCAATGGTTATCGATATAGGAT
GTTTGAAAAATTGGGGATTAAAAATGATGTGGAGCTTACTTATTTGGCTATGAAGCACCGCATTATTGAACACCCCAATG
ATTTGTCACAAGATGATTAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-116)

Bacterial regulatory proteins, luxR family (GerE)

(148-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

100

100

1
  letA Legionella pneumophila strain ERS1305867

100

100

1