Detailed information    

insolico Bioinformatically predicted

Overview

Name   lpp1978   Type   Machinery gene
Locus tag   LpnA194_RS09930 Genome accession   NZ_CP114578
Coordinates   2206762..2207076 (-) Length   104 a.a.
NCBI ID   WP_011946908.1    Uniprot ID   A0A378KAB9
Organism   Legionella pneumophila strain A194     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2201762..2212076
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LpnA194_RS09905 (LpnA194_01989) - 2202186..2202686 (-) 501 WP_011946903.1 hypothetical protein -
  LpnA194_RS09910 (LpnA194_01990) - 2203179..2204039 (+) 861 WP_013101630.1 polysaccharide deacetylase family protein -
  LpnA194_RS09915 (LpnA194_01991) - 2204157..2205353 (-) 1197 WP_040146133.1 murein transglycosylase A -
  LpnA194_RS09920 (LpnA194_01992) lpp1976 2205463..2206020 (-) 558 WP_040146132.1 hypothetical protein Machinery gene
  LpnA194_RS09925 (LpnA194_01993) lpp1977 2206017..2206823 (-) 807 WP_011946907.1 PilW family protein Machinery gene
  LpnA194_RS09930 (LpnA194_01994) lpp1978 2206762..2207076 (-) 315 WP_011946908.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  LpnA194_RS09935 (LpnA194_01995) hisC 2207236..2208345 (+) 1110 WP_011946909.1 histidinol-phosphate transaminase -
  LpnA194_RS09940 (LpnA194_01996) - 2208382..2208723 (+) 342 WP_010947715.1 4a-hydroxytetrahydrobiopterin dehydratase -
  LpnA194_RS09945 (LpnA194_01998) secF 2208901..2209818 (-) 918 WP_010947716.1 protein translocase subunit SecF -
  LpnA194_RS09950 (LpnA194_01999) secD 2209831..2211687 (-) 1857 WP_011214250.1 protein translocase subunit SecD -
  LpnA194_RS09955 (LpnA194_02000) yajC 2211709..2212044 (-) 336 WP_010947718.1 preprotein translocase subunit YajC -

Sequence

Protein


Download         Length: 104 a.a.        Molecular weight: 12203.26 Da        Isoelectric Point: 9.8344

>NTDB_id=766512 LpnA194_RS09930 WP_011946908.1 2206762..2207076(-) (lpp1978) [Legionella pneumophila strain A194]
MSKHQGFTLMEVLVSLMLMTTVVLTLVEQQLKTRDLINHLIWRIQGSQYLDQVDEALYISENRLPLPPANYHFDIRRSQK
KIILNVTWFKKSQSIIRSYDLGAN

Nucleotide


Download         Length: 315 bp        

>NTDB_id=766512 LpnA194_RS09930 WP_011946908.1 2206762..2207076(-) (lpp1978) [Legionella pneumophila strain A194]
ATGAGCAAGCATCAGGGTTTCACTCTAATGGAAGTACTTGTGTCATTAATGCTAATGACAACGGTAGTTCTGACGTTAGT
GGAACAACAGTTGAAAACCAGAGATCTAATCAATCATCTTATTTGGCGAATCCAAGGCTCCCAATATCTAGATCAAGTAG
ATGAAGCATTATATATTAGTGAGAATAGACTCCCTTTGCCGCCTGCAAATTATCATTTTGATATCAGGCGATCTCAAAAG
AAAATCATTTTGAATGTTACGTGGTTTAAAAAAAGCCAATCAATTATTCGCTCCTATGATCTGGGTGCTAATTGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-26)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A378KAB9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lpp1978 Legionella pneumophila strain ERS1305867

97.115

100

0.971
  lpp1978 Legionella pneumophila str. Paris

95.192

100

0.952