Detailed information    

insolico Bioinformatically predicted

Overview

Name   lpp1976   Type   Machinery gene
Locus tag   LpnA194_RS09920 Genome accession   NZ_CP114578
Coordinates   2205463..2206020 (-) Length   185 a.a.
NCBI ID   WP_040146132.1    Uniprot ID   -
Organism   Legionella pneumophila strain A194     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2200463..2211020
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LpnA194_RS09895 (LpnA194_01987) - 2200614..2201237 (-) 624 WP_229290783.1 hypothetical protein -
  LpnA194_RS09900 (LpnA194_01988) - 2201456..2202106 (-) 651 WP_011215956.1 lysoplasmalogenase -
  LpnA194_RS09905 (LpnA194_01989) - 2202186..2202686 (-) 501 WP_011946903.1 hypothetical protein -
  LpnA194_RS09910 (LpnA194_01990) - 2203179..2204039 (+) 861 WP_013101630.1 polysaccharide deacetylase family protein -
  LpnA194_RS09915 (LpnA194_01991) - 2204157..2205353 (-) 1197 WP_040146133.1 murein transglycosylase A -
  LpnA194_RS09920 (LpnA194_01992) lpp1976 2205463..2206020 (-) 558 WP_040146132.1 hypothetical protein Machinery gene
  LpnA194_RS09925 (LpnA194_01993) lpp1977 2206017..2206823 (-) 807 WP_011946907.1 PilW family protein Machinery gene
  LpnA194_RS09930 (LpnA194_01994) lpp1978 2206762..2207076 (-) 315 WP_011946908.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  LpnA194_RS09935 (LpnA194_01995) hisC 2207236..2208345 (+) 1110 WP_011946909.1 histidinol-phosphate transaminase -
  LpnA194_RS09940 (LpnA194_01996) - 2208382..2208723 (+) 342 WP_010947715.1 4a-hydroxytetrahydrobiopterin dehydratase -
  LpnA194_RS09945 (LpnA194_01998) secF 2208901..2209818 (-) 918 WP_010947716.1 protein translocase subunit SecF -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 21726.17 Da        Isoelectric Point: 7.2966

>NTDB_id=766510 LpnA194_RS09920 WP_040146132.1 2205463..2206020(-) (lpp1976) [Legionella pneumophila strain A194]
MKKTDSGFILLMTLCITFLMSLLVLASLQQIFLQYKSLNSQETFHQNFYQLEHWMMRLARSPLLYAGMDCYVQKDYGANK
IANELVKNKGCLLILNQKKYRYFIEDLNEFSCLVLNKDGQKYASHHFRFTVLQDDEHGEFSIMQLRFIKLGSNLSSCPEE
EIQVKEGVSSWRYLPDYKNFEILTG

Nucleotide


Download         Length: 558 bp        

>NTDB_id=766510 LpnA194_RS09920 WP_040146132.1 2205463..2206020(-) (lpp1976) [Legionella pneumophila strain A194]
ATGAAAAAAACCGATTCCGGTTTCATTCTTTTAATGACGCTTTGTATAACTTTCTTGATGAGCTTATTGGTTTTGGCAAG
CCTCCAACAGATATTCTTGCAATACAAATCACTCAATTCACAGGAGACATTCCATCAAAATTTCTATCAGTTGGAACATT
GGATGATGCGACTCGCTCGTTCACCGTTATTGTATGCAGGTATGGATTGTTATGTGCAAAAGGATTATGGAGCTAATAAA
ATAGCAAACGAGTTGGTTAAAAATAAAGGATGTTTGCTCATATTAAATCAGAAAAAATACAGATATTTTATTGAGGACCT
GAACGAATTTTCTTGTTTGGTTCTTAATAAGGATGGGCAAAAATATGCTTCTCACCATTTTAGATTCACCGTATTACAAG
ACGATGAGCATGGCGAATTTTCTATCATGCAATTAAGGTTTATCAAATTGGGTAGCAATTTGTCCTCTTGTCCAGAGGAG
GAAATACAGGTGAAGGAAGGGGTAAGCAGCTGGAGATACTTGCCGGATTATAAAAATTTTGAAATATTAACTGGTTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lpp1976 Legionella pneumophila strain ERS1305867

95.676

100

0.957
  lpp1976 Legionella pneumophila str. Paris

95.676

100

0.957