Detailed information    

insolico Bioinformatically predicted

Overview

Name   lpp1976   Type   Machinery gene
Locus tag   LpnH3D14_RS10330 Genome accession   NZ_CP114576
Coordinates   2272779..2273336 (-) Length   185 a.a.
NCBI ID   WP_011946906.1    Uniprot ID   -
Organism   Legionella pneumophila strain H3     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2267779..2278336
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LpnH3D14_RS10305 (LpnH3D14_02072) - 2267930..2268553 (-) 624 WP_229295700.1 hypothetical protein -
  LpnH3D14_RS10310 (LpnH3D14_02073) - 2268772..2269422 (-) 651 WP_011215956.1 lysoplasmalogenase -
  LpnH3D14_RS10315 (LpnH3D14_02074) - 2269502..2270002 (-) 501 WP_011946903.1 hypothetical protein -
  LpnH3D14_RS10320 (LpnH3D14_02075) - 2270495..2271355 (+) 861 WP_011946904.1 polysaccharide deacetylase family protein -
  LpnH3D14_RS10325 (LpnH3D14_02076) - 2271473..2272669 (-) 1197 WP_013101631.1 murein transglycosylase A -
  LpnH3D14_RS10330 (LpnH3D14_02077) lpp1976 2272779..2273336 (-) 558 WP_011946906.1 hypothetical protein Machinery gene
  LpnH3D14_RS10335 (LpnH3D14_02078) lpp1977 2273333..2274139 (-) 807 WP_011946907.1 PilW family protein Machinery gene
  LpnH3D14_RS10340 (LpnH3D14_02079) lpp1978 2274078..2274392 (-) 315 WP_011946908.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  LpnH3D14_RS10345 (LpnH3D14_02080) hisC 2274552..2275661 (+) 1110 WP_011946909.1 histidinol-phosphate transaminase -
  LpnH3D14_RS10350 (LpnH3D14_02081) - 2275698..2276039 (+) 342 WP_010947715.1 4a-hydroxytetrahydrobiopterin dehydratase -
  LpnH3D14_RS10355 (LpnH3D14_02083) secF 2276217..2277134 (-) 918 WP_010947716.1 protein translocase subunit SecF -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 21710.17 Da        Isoelectric Point: 7.2966

>NTDB_id=766469 LpnH3D14_RS10330 WP_011946906.1 2272779..2273336(-) (lpp1976) [Legionella pneumophila strain H3]
MKKTDSGFILLMTLCITFLMSLLVLASLQQIFLQYKALNSQETFHQNFYQLEHWMMRLARSPLLYAGMDCYVQKDYGANK
IANELVKNKGCLLILNQKKYRYFIEDLNEFSCLVLNKDGQKYASHHFRFTVLQDDEHGEFSIMQLRFIKLGSNLSSCPEE
EIQVKEGVSSWRYLPDYKNFEILTG

Nucleotide


Download         Length: 558 bp        

>NTDB_id=766469 LpnH3D14_RS10330 WP_011946906.1 2272779..2273336(-) (lpp1976) [Legionella pneumophila strain H3]
ATGAAAAAAACCGATTCCGGTTTCATTCTTTTAATGACGCTTTGTATAACTTTCTTGATGAGCTTATTGGTTTTGGCAAG
CCTCCAACAGATATTCTTGCAATACAAAGCACTCAATTCACAGGAGACATTCCATCAAAATTTCTATCAGTTGGAACATT
GGATGATGCGACTCGCTCGTTCACCGTTATTGTATGCAGGTATGGATTGTTATGTGCAAAAGGATTATGGAGCTAATAAA
ATAGCAAACGAGTTGGTTAAAAATAAAGGATGTTTGCTCATATTAAATCAGAAAAAATACAGATATTTTATTGAGGACCT
GAACGAATTTTCTTGTTTGGTTCTTAATAAGGATGGGCAAAAATATGCTTCTCACCATTTTAGATTCACCGTATTACAAG
ACGATGAGCATGGCGAATTTTCTATCATGCAATTAAGGTTTATCAAATTGGGTAGCAATTTGTCCTCTTGTCCAGAGGAG
GAAATACAGGTGAAGGAAGGGGTAAGCAGCTGGAGATACTTGCCGGATTATAAAAATTTTGAAATATTAACTGGTTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lpp1976 Legionella pneumophila strain ERS1305867

96.216

100

0.962
  lpp1976 Legionella pneumophila str. Paris

96.216

100

0.962