Detailed information    

insolico Bioinformatically predicted

Overview

Name   lpp1978   Type   Machinery gene
Locus tag   LpnH3D14_RS10340 Genome accession   NZ_CP114576
Coordinates   2274078..2274392 (-) Length   104 a.a.
NCBI ID   WP_011946908.1    Uniprot ID   A0A378KAB9
Organism   Legionella pneumophila strain H3     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2269078..2279392
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LpnH3D14_RS10315 (LpnH3D14_02074) - 2269502..2270002 (-) 501 WP_011946903.1 hypothetical protein -
  LpnH3D14_RS10320 (LpnH3D14_02075) - 2270495..2271355 (+) 861 WP_011946904.1 polysaccharide deacetylase family protein -
  LpnH3D14_RS10325 (LpnH3D14_02076) - 2271473..2272669 (-) 1197 WP_013101631.1 murein transglycosylase A -
  LpnH3D14_RS10330 (LpnH3D14_02077) lpp1976 2272779..2273336 (-) 558 WP_011946906.1 hypothetical protein Machinery gene
  LpnH3D14_RS10335 (LpnH3D14_02078) lpp1977 2273333..2274139 (-) 807 WP_011946907.1 PilW family protein Machinery gene
  LpnH3D14_RS10340 (LpnH3D14_02079) lpp1978 2274078..2274392 (-) 315 WP_011946908.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  LpnH3D14_RS10345 (LpnH3D14_02080) hisC 2274552..2275661 (+) 1110 WP_011946909.1 histidinol-phosphate transaminase -
  LpnH3D14_RS10350 (LpnH3D14_02081) - 2275698..2276039 (+) 342 WP_010947715.1 4a-hydroxytetrahydrobiopterin dehydratase -
  LpnH3D14_RS10355 (LpnH3D14_02083) secF 2276217..2277134 (-) 918 WP_010947716.1 protein translocase subunit SecF -
  LpnH3D14_RS10360 (LpnH3D14_02084) secD 2277147..2279003 (-) 1857 WP_011214250.1 protein translocase subunit SecD -
  LpnH3D14_RS10365 (LpnH3D14_02085) yajC 2279025..2279360 (-) 336 WP_010947718.1 preprotein translocase subunit YajC -

Sequence

Protein


Download         Length: 104 a.a.        Molecular weight: 12203.26 Da        Isoelectric Point: 9.8344

>NTDB_id=766471 LpnH3D14_RS10340 WP_011946908.1 2274078..2274392(-) (lpp1978) [Legionella pneumophila strain H3]
MSKHQGFTLMEVLVSLMLMTTVVLTLVEQQLKTRDLINHLIWRIQGSQYLDQVDEALYISENRLPLPPANYHFDIRRSQK
KIILNVTWFKKSQSIIRSYDLGAN

Nucleotide


Download         Length: 315 bp        

>NTDB_id=766471 LpnH3D14_RS10340 WP_011946908.1 2274078..2274392(-) (lpp1978) [Legionella pneumophila strain H3]
ATGAGCAAGCATCAGGGTTTCACTCTAATGGAAGTACTTGTGTCATTAATGCTAATGACAACGGTAGTTCTGACGTTAGT
GGAACAACAGTTGAAAACCAGAGATCTAATCAATCATCTTATTTGGCGAATCCAAGGCTCCCAATATCTAGATCAAGTAG
ATGAAGCATTATATATTAGTGAGAATAGACTCCCTCTGCCGCCTGCAAATTATCATTTTGATATCAGGCGATCTCAAAAG
AAAATCATTTTGAATGTTACGTGGTTTAAAAAAAGCCAATCAATTATTCGCTCCTATGATCTGGGTGCTAATTGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-26)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A378KAB9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lpp1978 Legionella pneumophila strain ERS1305867

97.115

100

0.971
  lpp1978 Legionella pneumophila str. Paris

95.192

100

0.952