Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   O4445_RS11170 Genome accession   NZ_CP114550
Coordinates   2398213..2399625 (-) Length   470 a.a.
NCBI ID   WP_031338065.1    Uniprot ID   -
Organism   Xylella fastidiosa subsp. pauca strain AM2-Angelina     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 2393213..2404625
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O4445_RS11155 (O4445_11155) - 2393370..2393822 (+) 453 WP_088371979.1 pilin -
  O4445_RS11160 (O4445_11160) - 2395119..2395565 (+) 447 WP_010894963.1 pilin -
  O4445_RS11165 (O4445_11165) pilB 2396386..2398119 (+) 1734 WP_088371981.1 type IV-A pilus assembly ATPase PilB Machinery gene
  O4445_RS11170 (O4445_11170) pilR 2398213..2399625 (-) 1413 WP_031338065.1 sigma-54 dependent transcriptional regulator Regulator
  O4445_RS11175 (O4445_11175) - 2399811..2401421 (-) 1611 WP_023907063.1 ATP-binding protein -
  O4445_RS11180 (O4445_11180) sucC 2401671..2402834 (+) 1164 WP_010894968.1 ADP-forming succinate--CoA ligase subunit beta -
  O4445_RS11185 (O4445_11185) sucD 2402863..2403735 (+) 873 WP_010894969.1 succinate--CoA ligase subunit alpha -
  O4445_RS11190 (O4445_11190) - 2404022..2404606 (+) 585 WP_229716517.1 hypothetical protein -

Sequence

Protein


Download         Length: 470 a.a.        Molecular weight: 51325.24 Da        Isoelectric Point: 7.2157

>NTDB_id=766361 O4445_RS11170 WP_031338065.1 2398213..2399625(-) (pilR) [Xylella fastidiosa subsp. pauca strain AM2-Angelina]
MNQSRSALIVDDERDIRELLVLTLGRMGLRIRTAANLAQAYALLESDSFNLCITDMRLPDGSGIELVNKIVRHYPRTPVA
MITAFGSIELAVEALKEGAFDFVSKPVDLNVLRGMVRHALELNNRERSVVSSQPQSPSQRLLGESLPMAQLRATIAKVAR
SQAPVYILGESGVGKELVARTIHEQSVRAAGAFVPVNCGAIPVDLMESEFFGHKKGSFTGAHTDKPGLFQSAGGGTLFLD
EVAELPLHMQVKLLRAIQEKSIRPIGATVEVPVDVRILSATHQDLSDLIANGRFRHDLYYRINVIEIRVPPLRERAGDLP
HLAAAIVARLAHTHGRAVPLLSPSALEALDHYSFPGNVRELENILERALALTEDDHIGVADLHLPQGSLHGQGLPLPLVP
TVLPIVPVDASASVEGENTPAALPSYMEQLERAAIQKALEENRWNKTKTAAKLGITFRALRYKLKKLGME

Nucleotide


Download         Length: 1413 bp        

>NTDB_id=766361 O4445_RS11170 WP_031338065.1 2398213..2399625(-) (pilR) [Xylella fastidiosa subsp. pauca strain AM2-Angelina]
ATGAATCAATCCCGCAGTGCTCTGATTGTCGATGACGAGCGCGACATCCGTGAACTTTTGGTCCTTACGCTAGGACGTAT
GGGGCTGCGTATCAGAACGGCAGCTAATCTGGCACAAGCATACGCGTTACTTGAGTCTGACTCGTTCAATCTTTGTATCA
CCGACATGCGTTTACCTGACGGCAGTGGCATTGAGCTGGTGAACAAGATTGTGCGTCATTATCCACGTACCCCGGTGGCC
ATGATCACTGCTTTTGGCAGTATCGAACTGGCGGTAGAGGCGCTCAAGGAAGGTGCTTTTGACTTTGTCAGCAAACCTGT
TGATCTGAATGTCCTGCGAGGCATGGTCCGTCATGCTTTGGAATTGAACAATCGTGAACGCTCTGTTGTGTCAAGTCAGC
CACAAAGCCCCAGCCAACGTCTCCTTGGCGAGTCGTTACCGATGGCTCAGCTTCGGGCCACCATCGCTAAAGTGGCGCGT
AGTCAAGCTCCGGTTTATATCCTTGGTGAATCCGGAGTTGGTAAGGAATTGGTTGCACGTACGATCCACGAACAGAGTGT
CCGTGCTGCTGGGGCGTTCGTGCCGGTTAACTGTGGTGCGATCCCTGTGGATCTTATGGAAAGCGAATTTTTCGGTCACA
AGAAAGGGAGTTTCACCGGTGCGCATACTGATAAACCAGGCTTATTCCAAAGTGCTGGCGGCGGTACTTTATTCCTGGAT
GAAGTTGCCGAATTACCCTTGCACATGCAAGTTAAATTGCTGCGTGCGATTCAGGAGAAATCGATACGGCCAATCGGTGC
AACCGTTGAGGTACCAGTAGATGTGCGTATTTTATCGGCGACTCACCAAGATCTGAGTGACCTGATTGCCAATGGCCGCT
TCCGTCACGATTTGTACTACCGCATCAATGTGATCGAGATACGTGTTCCACCGCTACGTGAGCGTGCTGGCGATTTGCCG
CATCTTGCTGCAGCCATTGTAGCTCGCTTGGCGCACACGCATGGGCGGGCGGTCCCGTTGCTTTCACCCTCCGCCTTGGA
GGCGTTAGATCATTATTCGTTCCCGGGTAATGTGCGTGAACTGGAGAACATTCTGGAGCGTGCTCTAGCACTGACTGAAG
ATGATCATATCGGTGTCGCGGATCTGCATCTGCCCCAGGGCAGTTTGCATGGACAGGGATTGCCGCTCCCGTTAGTGCCC
ACAGTTCTCCCGATTGTGCCTGTGGACGCATCGGCATCGGTGGAGGGTGAGAATACGCCGGCTGCCTTGCCGTCGTATAT
GGAGCAGCTGGAACGTGCTGCCATTCAAAAGGCGTTGGAAGAGAATCGCTGGAATAAAACAAAGACAGCCGCAAAACTTG
GCATCACTTTCCGTGCCTTGCGTTACAAACTAAAGAAGCTGGGCATGGAGTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(8-116)

Bacterial regulatory protein, Fis family (HTH_8)

(427-467)

Sigma-54 interaction domain (Sigma54_activat)

(142-307)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

58.422

99.787

0.583
  pilR Acinetobacter baumannii strain A118

47.269

100

0.479