Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   QIH95_RS31450 Genome accession   NZ_CP126013
Coordinates   6572981..6573631 (+) Length   216 a.a.
NCBI ID   WP_014494168.1    Uniprot ID   A0A1Y2JCJ5
Organism   Bradyrhizobium japonicum strain S11L-Bj     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 6567981..6578631
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QIH95_RS31425 (QIH95_31425) - 6568479..6569219 (-) 741 WP_014494173.1 metallophosphoesterase -
  QIH95_RS31430 (QIH95_31430) - 6569337..6569942 (-) 606 WP_014494172.1 hypothetical protein -
  QIH95_RS31435 (QIH95_31435) - 6569935..6570621 (-) 687 WP_014494171.1 hypothetical protein -
  QIH95_RS31440 (QIH95_31440) - 6570618..6571388 (-) 771 WP_028158454.1 MotA/TolQ/ExbB proton channel family protein -
  QIH95_RS31445 (QIH95_31445) - 6571603..6572973 (+) 1371 WP_212453686.1 sensor histidine kinase -
  QIH95_RS31450 (QIH95_31450) letA 6572981..6573631 (+) 651 WP_014494168.1 response regulator transcription factor Regulator
  QIH95_RS31455 (QIH95_31455) - 6573775..6574806 (+) 1032 WP_038956118.1 MBL fold metallo-hydrolase -
  QIH95_RS31460 (QIH95_31460) - 6574901..6575191 (+) 291 WP_014494166.1 hypothetical protein -
  QIH95_RS31465 (QIH95_31465) - 6575228..6575815 (-) 588 WP_038956117.1 TetR family transcriptional regulator -
  QIH95_RS31470 (QIH95_31470) purB 6576385..6577692 (+) 1308 WP_014494164.1 adenylosuccinate lyase -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 22930.03 Da        Isoelectric Point: 6.6083

>NTDB_id=766322 QIH95_RS31450 WP_014494168.1 6572981..6573631(+) (letA) [Bradyrhizobium japonicum strain S11L-Bj]
MSDVAATGISVLLVDDHPIVRQGYRRVLESQGDLHVVAEADNAADAYGAFKAHDPDVVLLDISMPGASGLEAIRNIRARS
PRARILVFTMHNEAVLVKAAFSAGASGFVTKSSEPSAVVTAIRSVARGERAMSDDIAHILAEDSLSAGSALDQLGEREIE
ILRQFAGGATTEQIAAHLNLSVKTVQNYHYLIKTKTGARTDAQLVRLAASCGLTRI

Nucleotide


Download         Length: 651 bp        

>NTDB_id=766322 QIH95_RS31450 WP_014494168.1 6572981..6573631(+) (letA) [Bradyrhizobium japonicum strain S11L-Bj]
ATGAGCGATGTCGCGGCAACAGGCATCTCCGTGCTGCTGGTCGACGATCATCCGATCGTGCGGCAAGGTTACCGCCGCGT
GCTGGAAAGCCAGGGCGATCTCCATGTCGTGGCGGAAGCCGACAACGCGGCCGACGCCTACGGCGCCTTCAAGGCGCACG
ACCCTGATGTCGTCTTGCTGGACATCTCGATGCCCGGCGCGAGCGGGCTGGAGGCGATCCGCAACATCCGCGCGCGCAGC
CCGCGGGCGCGCATCCTCGTCTTCACCATGCACAACGAAGCCGTGCTGGTGAAAGCCGCCTTCAGCGCCGGCGCCAGCGG
CTTCGTCACCAAGAGCAGCGAGCCCTCCGCGGTCGTCACGGCGATCCGCAGCGTTGCGCGCGGCGAGCGTGCCATGAGCG
ACGACATCGCGCATATCCTGGCCGAGGACAGCCTGTCGGCGGGCTCGGCGCTGGACCAACTGGGTGAGCGCGAGATCGAG
ATCCTGCGCCAATTCGCCGGCGGCGCGACGACCGAGCAGATTGCCGCGCATCTCAATCTCAGCGTCAAGACGGTGCAGAA
CTATCACTATCTGATCAAGACCAAGACCGGCGCACGCACAGACGCGCAGCTCGTGCGGCTGGCCGCGAGCTGCGGGTTGA
CGCGGATCTAG

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(11-123)

Bacterial regulatory proteins, luxR family (GerE)

(153-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1Y2JCJ5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

39.109

93.519

0.366
  letA Legionella pneumophila strain ERS1305867

39.109

93.519

0.366