Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   O2U09_RS02100 Genome accession   NZ_CP114526
Coordinates   413980..414531 (+) Length   183 a.a.
NCBI ID   WP_003703384.1    Uniprot ID   A0A1D7TQA5
Organism   Ligilactobacillus salivarius strain S103     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 408980..419531
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O2U09_RS02090 (O2U09_02085) gyrA 410886..413432 (+) 2547 WP_283474133.1 DNA gyrase subunit A -
  O2U09_RS02095 (O2U09_02090) rpsF 413643..413939 (+) 297 WP_269148675.1 30S ribosomal protein S6 -
  O2U09_RS02100 (O2U09_02095) ssb 413980..414531 (+) 552 WP_003703384.1 single-stranded DNA-binding protein Machinery gene
  O2U09_RS02105 (O2U09_02100) rpsR 414553..414789 (+) 237 WP_003701427.1 30S ribosomal protein S18 -
  O2U09_RS02110 (O2U09_02105) - 414852..415715 (-) 864 WP_081508897.1 NAD(P)-dependent oxidoreductase -
  O2U09_RS02115 (O2U09_02110) - 415861..416874 (+) 1014 WP_283474129.1 glycosyltransferase family A protein -
  O2U09_RS02120 (O2U09_02115) - 417099..417881 (+) 783 WP_310658114.1 M23 family metallopeptidase -

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 20196.76 Da        Isoelectric Point: 4.4463

>NTDB_id=766272 O2U09_RS02100 WP_003703384.1 413980..414531(+) (ssb) [Ligilactobacillus salivarius strain S103]
MINRAILVGRLTRDPDLRYTASGAAVATFTVAVNRQFTNQQGEREADFINCVMWRKPAENFANFTHKGSLVGIDGRIQTR
SYENQQGTRVYVTEVVAENFSLLESRAEADRYREQHGMTQNNYGNNAPSQNQASQFDSNPFGDSQSNNSFGGNTPANNGA
DNSADPFADNGQSIDISDDDLPF

Nucleotide


Download         Length: 552 bp        

>NTDB_id=766272 O2U09_RS02100 WP_003703384.1 413980..414531(+) (ssb) [Ligilactobacillus salivarius strain S103]
GTGATTAATAGAGCTATTCTAGTAGGTCGTTTAACAAGAGATCCTGATTTACGTTACACGGCTTCTGGAGCTGCGGTTGC
TACATTTACTGTTGCTGTAAATCGTCAATTTACTAACCAACAAGGTGAACGTGAAGCTGATTTTATTAACTGTGTAATGT
GGCGTAAACCAGCAGAAAATTTTGCCAACTTTACTCATAAAGGTTCATTGGTTGGGATTGACGGACGAATTCAAACTCGT
TCTTATGAAAACCAACAAGGAACAAGAGTATATGTTACAGAAGTTGTAGCTGAGAATTTCTCATTGTTGGAATCACGTGC
CGAAGCAGATCGTTATCGTGAACAACATGGAATGACACAAAATAATTACGGAAATAATGCTCCTTCGCAAAATCAAGCAT
CACAGTTTGATAGTAATCCATTCGGTGATTCTCAATCAAATAATAGTTTTGGTGGAAATACACCAGCAAATAATGGAGCA
GATAATAGTGCTGATCCATTTGCTGATAATGGACAATCTATTGATATTTCTGATGATGACTTGCCATTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1D7TQA5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

65.574

100

0.656
  ssbA Bacillus subtilis subsp. subtilis str. 168

56.831

100

0.568