Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   O2U05_RS09995 Genome accession   NZ_CP114519
Coordinates   1834101..1834652 (-) Length   183 a.a.
NCBI ID   WP_003703384.1    Uniprot ID   A0A1D7TQA5
Organism   Ligilactobacillus salivarius strain S91     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 1830751..1842657 1834101..1834652 within 0


Gene organization within MGE regions


Location: 1830751..1842657
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O2U05_RS09975 (O2U05_09965) - 1830751..1831533 (-) 783 WP_310658114.1 M23 family metallopeptidase -
  O2U05_RS09980 (O2U05_09970) - 1831758..1832771 (-) 1014 WP_283474129.1 glycosyltransferase family A protein -
  O2U05_RS09985 (O2U05_09975) - 1832917..1833780 (+) 864 WP_081508897.1 NAD(P)-dependent oxidoreductase -
  O2U05_RS09990 (O2U05_09980) rpsR 1833843..1834079 (-) 237 WP_003701427.1 30S ribosomal protein S18 -
  O2U05_RS09995 (O2U05_09985) ssb 1834101..1834652 (-) 552 WP_003703384.1 single-stranded DNA-binding protein Machinery gene
  O2U05_RS10000 (O2U05_09990) rpsF 1834693..1834989 (-) 297 WP_269148675.1 30S ribosomal protein S6 -
  O2U05_RS10005 (O2U05_09995) gyrA 1835200..1837746 (-) 2547 WP_283474133.1 DNA gyrase subunit A -
  O2U05_RS10010 (O2U05_10000) gyrB 1837783..1839741 (-) 1959 WP_081536602.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  O2U05_RS10015 (O2U05_10005) recF 1839744..1840883 (-) 1140 WP_283474137.1 DNA replication/repair protein RecF -
  O2U05_RS10020 (O2U05_10010) yaaA 1840883..1841104 (-) 222 WP_003701414.1 S4 domain-containing protein YaaA -
  O2U05_RS10025 (O2U05_10015) dnaN 1841518..1842657 (-) 1140 WP_011475453.1 DNA polymerase III subunit beta -

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 20196.76 Da        Isoelectric Point: 4.4463

>NTDB_id=766238 O2U05_RS09995 WP_003703384.1 1834101..1834652(-) (ssb) [Ligilactobacillus salivarius strain S91]
MINRAILVGRLTRDPDLRYTASGAAVATFTVAVNRQFTNQQGEREADFINCVMWRKPAENFANFTHKGSLVGIDGRIQTR
SYENQQGTRVYVTEVVAENFSLLESRAEADRYREQHGMTQNNYGNNAPSQNQASQFDSNPFGDSQSNNSFGGNTPANNGA
DNSADPFADNGQSIDISDDDLPF

Nucleotide


Download         Length: 552 bp        

>NTDB_id=766238 O2U05_RS09995 WP_003703384.1 1834101..1834652(-) (ssb) [Ligilactobacillus salivarius strain S91]
GTGATTAATAGAGCTATTCTAGTAGGTCGTTTAACAAGAGATCCTGATTTACGTTACACGGCTTCTGGAGCTGCGGTTGC
TACATTTACTGTTGCTGTAAATCGTCAATTTACTAACCAACAAGGTGAACGTGAAGCTGATTTTATTAACTGTGTAATGT
GGCGTAAACCAGCAGAAAATTTTGCCAACTTTACTCATAAAGGTTCATTGGTTGGGATTGACGGACGAATTCAAACTCGT
TCTTATGAAAACCAACAAGGAACAAGAGTATATGTTACAGAAGTTGTAGCTGAGAATTTCTCATTGTTGGAATCACGTGC
CGAAGCAGATCGTTATCGTGAACAACATGGAATGACACAAAATAATTACGGAAATAATGCTCCTTCGCAAAATCAAGCAT
CACAGTTTGATAGTAATCCATTCGGTGATTCTCAATCAAATAATAGTTTTGGTGGAAATACACCAGCAAATAATGGAGCA
GATAATAGTGCTGATCCATTTGCTGATAATGGACAATCTATTGATATTTCTGATGATGACTTGCCATTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1D7TQA5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

65.574

100

0.656
  ssbA Bacillus subtilis subsp. subtilis str. 168

56.831

100

0.568