Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   QIH85_RS16640 Genome accession   NZ_CP126010
Coordinates   3583117..3583767 (-) Length   216 a.a.
NCBI ID   WP_014494168.1    Uniprot ID   A0A1Y2JCJ5
Organism   Bradyrhizobium japonicum strain N03G-Bj     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 3578117..3588767
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QIH85_RS16620 (QIH85_16625) purB 3579054..3580361 (-) 1308 WP_014494164.1 adenylosuccinate lyase -
  QIH85_RS16625 (QIH85_16630) - 3580931..3581518 (+) 588 WP_038956117.1 TetR family transcriptional regulator -
  QIH85_RS16630 (QIH85_16635) - 3581555..3581845 (-) 291 WP_038933963.1 hypothetical protein -
  QIH85_RS16635 (QIH85_16640) - 3581942..3582973 (-) 1032 WP_038933964.1 MBL fold metallo-hydrolase -
  QIH85_RS16640 (QIH85_16645) letA 3583117..3583767 (-) 651 WP_014494168.1 response regulator transcription factor Regulator
  QIH85_RS16645 (QIH85_16650) - 3583775..3585145 (-) 1371 WP_039152057.1 sensor histidine kinase -
  QIH85_RS16650 (QIH85_16655) - 3585360..3586130 (+) 771 WP_028158454.1 MotA/TolQ/ExbB proton channel family protein -
  QIH85_RS16655 (QIH85_16660) - 3586127..3586813 (+) 687 WP_014494171.1 hypothetical protein -
  QIH85_RS16660 (QIH85_16665) - 3586806..3587411 (+) 606 WP_038933966.1 hypothetical protein -
  QIH85_RS16665 (QIH85_16670) - 3587529..3588269 (+) 741 WP_014494173.1 metallophosphoesterase -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 22930.03 Da        Isoelectric Point: 6.6083

>NTDB_id=766230 QIH85_RS16640 WP_014494168.1 3583117..3583767(-) (letA) [Bradyrhizobium japonicum strain N03G-Bj]
MSDVAATGISVLLVDDHPIVRQGYRRVLESQGDLHVVAEADNAADAYGAFKAHDPDVVLLDISMPGASGLEAIRNIRARS
PRARILVFTMHNEAVLVKAAFSAGASGFVTKSSEPSAVVTAIRSVARGERAMSDDIAHILAEDSLSAGSALDQLGEREIE
ILRQFAGGATTEQIAAHLNLSVKTVQNYHYLIKTKTGARTDAQLVRLAASCGLTRI

Nucleotide


Download         Length: 651 bp        

>NTDB_id=766230 QIH85_RS16640 WP_014494168.1 3583117..3583767(-) (letA) [Bradyrhizobium japonicum strain N03G-Bj]
ATGAGCGATGTCGCGGCAACAGGCATCTCCGTGCTGCTGGTCGACGATCATCCGATCGTGCGGCAAGGCTACCGCCGCGT
GCTGGAGAGCCAGGGCGATCTCCATGTCGTGGCGGAAGCCGACAACGCCGCGGATGCATATGGCGCCTTCAAGGCGCACG
ACCCTGATGTCGTCTTGCTGGACATCTCGATGCCCGGCGCGAGCGGGCTGGAGGCGATCCGCAACATCCGCGCGCGCAGC
CCGCGGGCGCGCATCCTCGTCTTCACCATGCACAACGAAGCCGTGCTGGTGAAAGCCGCCTTCAGCGCCGGCGCCAGCGG
CTTCGTCACCAAAAGCAGCGAACCCTCCGCGGTCGTCACCGCGATCCGCAGCGTTGCGCGCGGCGAGCGTGCCATGAGCG
ACGACATCGCGCATATCCTAGCCGAGGACAGCCTGTCGGCGGGCTCGGCGCTGGACCAACTGGGTGAGCGCGAGATCGAG
ATCCTGCGCCAATTCGCCGGCGGCGCGACGACCGAGCAGATTGCCGCGCATCTCAATCTCAGCGTCAAGACGGTGCAGAA
CTATCACTATCTGATCAAGACCAAGACCGGCGCACGCACAGACGCGCAGCTCGTGCGGCTGGCCGCGAGCTGCGGGTTGA
CGCGGATCTAG

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(11-123)

Bacterial regulatory proteins, luxR family (GerE)

(153-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1Y2JCJ5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

39.109

93.519

0.366
  letA Legionella pneumophila strain ERS1305867

39.109

93.519

0.366