Detailed information NTG0766161

Bioinformatically predicted

Overview

• Name: clpX
• Type: Regulator
• Locus tag: QIH94_RS19570
• Genome accession: NZ_CP126006
• Coordinates: 4018612..4019883 (+)
• Length: 423 a.a.
• NCBI ID: WP_014494834.1
• Uniprot ID: A0ABY7MCD4
• Organism: Bradyrhizobium japonicum strain S06K-Bj
• Function: require for competence development (predicted from homology) Competence regulation

Genomic Context

Location: 4013612..4024883

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QIH94_RS19550 (QIH94_19550)	-	4014090..4015442 (-)	1353	WP_304490044.1	multicopper oxidase family protein	-
QIH94_RS19560 (QIH94_19560)	tig	4015854..4017215 (+)	1362	WP_304490043.1	trigger factor	-
QIH94_RS19565 (QIH94_19565)	clpP	4017518..4018150 (+)	633	WP_014494833.1	ATP-dependent Clp protease proteolytic subunit	Regulator
QIH94_RS19570 (QIH94_19570)	clpX	4018612..4019883 (+)	1272	WP_014494834.1	ATP-dependent Clp protease ATP-binding subunit ClpX	Regulator
QIH94_RS19575 (QIH94_19575)	lon	4020208..4022631 (+)	2424	WP_014494835.1	endopeptidase La	-
QIH94_RS19580 (QIH94_19580)	-	4022701..4023105 (+)	405	WP_038936545.1	GFA family protein	-
QIH94_RS19590 (QIH94_19590)	-	4023509..4023700 (+)	192	WP_304490042.1	hypothetical protein	-
QIH94_RS19595 (QIH94_19595)	-	4023880..4024740 (+)	861	WP_304490041.1	class I SAM-dependent methyltransferase	-

Sequence

Protein

• Length: 423 a.a.
• Molecular weight: 46576.40 Da
• Isoelectric Point: 5.5461

>NTDB_id=766161 QIH94_RS19570 WP_014494834.1 4018612..4019883(+) (clpX) [Bradyrhizobium japonicum strain S06K-Bj]
MSKVGTSDSKNTLYCSFCGKSQHEVRKLIAGPTVFICDECVELCMDIIREENKSSLVKSRDGIPTPKEICKVLDDYVIGQ
SHAKKVLSVAVHNHYKRLNHQTKHNDVELAKSNILLIGPTGSGKTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENI
ILKLLQAADYNVERAQRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQVDTT
NILFICGGAFAGLEKIISARGRSTSIGFAAQVLAPEDRRTGEIFRHVEPEDLLKYGLIPEFVGRLPVVATLEDLDETSLK
KILTEPKNALVKQYQRLFEMENIELTFADEALGAVARKAIERKTGARGLRSILEAILLETMFDLPGLEGVEEVVISREVV
EGTARPLYIYADRSDRAVENASA

Nucleotide

• Length: 1272 bp

>NTDB_id=766161 QIH94_RS19570 WP_014494834.1 4018612..4019883(+) (clpX) [Bradyrhizobium japonicum strain S06K-Bj]
ATGAGTAAGGTCGGCACGAGCGACTCCAAGAACACGCTGTATTGCTCGTTCTGCGGCAAGAGCCAGCACGAAGTCCGCAA
ACTGATCGCGGGTCCCACGGTCTTCATTTGCGACGAGTGCGTTGAGCTCTGCATGGACATCATCCGCGAGGAGAACAAAT
CCTCGCTCGTGAAGTCGCGCGACGGCATTCCGACGCCGAAGGAAATCTGCAAGGTCCTGGACGATTACGTCATCGGCCAG
AGCCATGCCAAGAAGGTCCTGTCGGTCGCGGTGCACAATCACTACAAGCGCCTCAACCACCAGACCAAGCACAACGACGT
CGAACTCGCGAAGTCGAACATCCTGCTGATCGGTCCGACCGGTTCGGGCAAGACGCTGCTCGCGCAGACGCTCGCCCGCA
TCCTGGACGTGCCGTTCACGATGGCCGATGCAACGACGCTGACCGAAGCCGGCTATGTCGGCGAGGACGTCGAGAACATC
ATCCTGAAGCTGCTCCAGGCCGCCGACTACAATGTCGAGCGCGCCCAGCGCGGCATCGTCTACATCGACGAAATCGACAA
GATCAGCCGCAAGTCCGACAATCCCTCGATCACGCGCGACGTGTCGGGTGAGGGCGTGCAGCAGGCGCTGCTGAAGATCA
TGGAAGGCACGGTGGCTTCGGTCCCGCCGCAGGGCGGCCGCAAGCATCCCCAGCAGGAGTTCCTGCAGGTGGATACCACC
AACATCCTGTTCATCTGCGGCGGTGCGTTCGCCGGCCTCGAGAAGATCATCTCGGCGCGCGGGCGGTCGACCTCGATCGG
CTTCGCCGCCCAGGTGCTCGCGCCGGAGGATCGCCGTACCGGCGAGATCTTCCGCCACGTCGAGCCTGAGGACCTCCTGA
AGTACGGCCTCATCCCCGAATTCGTCGGCCGTCTGCCGGTCGTGGCGACGCTCGAGGATCTGGACGAGACCTCGCTGAAG
AAGATCCTGACCGAGCCGAAGAACGCGCTGGTGAAACAGTACCAGCGGCTGTTCGAGATGGAGAACATCGAGCTGACTTT
CGCCGACGAGGCGCTTGGCGCGGTCGCCCGCAAGGCGATCGAGCGCAAGACCGGCGCGCGTGGTCTGCGTTCGATCCTCG
AGGCGATCCTGCTCGAGACCATGTTCGACCTGCCGGGCCTGGAAGGTGTGGAAGAAGTCGTGATTTCGCGCGAAGTCGTG
GAAGGCACGGCCCGTCCGCTCTACATCTACGCCGATCGGTCCGATCGCGCCGTCGAGAACGCCAGCGCCTGA

Domains

Predicted by InterProScan.

• ClpX C4-type zinc finger (zf-C4_ClpX) (13-50)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (314-385)

• AAA domain (Cdc48 subfamily) (AAA_2) (111-307)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpX	Streptococcus mutans UA159	61.728	95.745	0.591
clpX	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	55.062	95.745	0.527