Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   QIH94_RS15455 Genome accession   NZ_CP126006
Coordinates   3235671..3236321 (-) Length   216 a.a.
NCBI ID   WP_028158452.1    Uniprot ID   -
Organism   Bradyrhizobium japonicum strain S06K-Bj     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 3230671..3241321
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QIH94_RS15435 (QIH94_15435) purB 3231608..3232915 (-) 1308 WP_028158449.1 adenylosuccinate lyase -
  QIH94_RS15440 (QIH94_15440) - 3233484..3234071 (+) 588 WP_247309366.1 TetR family transcriptional regulator -
  QIH94_RS15445 (QIH94_15445) - 3234108..3234398 (-) 291 WP_014494166.1 hypothetical protein -
  QIH94_RS15450 (QIH94_15450) - 3234495..3235526 (-) 1032 WP_304490456.1 MBL fold metallo-hydrolase -
  QIH94_RS15455 (QIH94_15455) letA 3235671..3236321 (-) 651 WP_028158452.1 response regulator transcription factor Regulator
  QIH94_RS15460 (QIH94_15460) - 3236329..3237699 (-) 1371 WP_304490455.1 sensor histidine kinase -
  QIH94_RS15465 (QIH94_15465) - 3237914..3238684 (+) 771 WP_304490454.1 MotA/TolQ/ExbB proton channel family protein -
  QIH94_RS15470 (QIH94_15470) - 3238681..3239367 (+) 687 WP_028147462.1 hypothetical protein -
  QIH94_RS15475 (QIH94_15475) - 3239360..3239965 (+) 606 WP_304490453.1 hypothetical protein -
  QIH94_RS15480 (QIH94_15480) - 3240083..3240823 (+) 741 WP_304490452.1 metallophosphoesterase -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 22944.06 Da        Isoelectric Point: 6.6086

>NTDB_id=766158 QIH94_RS15455 WP_028158452.1 3235671..3236321(-) (letA) [Bradyrhizobium japonicum strain S06K-Bj]
MSEVAATGISVLLVDDHPIVRQGYRRVLESQGDLHVVAEADNAADAYGAFKAHDPDVVLLDISMPGASGLEAIRNIRARS
PRARILVFTMHNEAVLVKAAFSAGASGFVTKSSEPSAVVTAIRSVARGERAMSDDIAHILAEDSLSAGSALDQLGEREIE
ILRQFAGGATTEQIAAHLNLSVKTVQNYHYLIKTKTGARTDAQLVRLAASCGLTRI

Nucleotide


Download         Length: 651 bp        

>NTDB_id=766158 QIH94_RS15455 WP_028158452.1 3235671..3236321(-) (letA) [Bradyrhizobium japonicum strain S06K-Bj]
ATGAGCGAGGTCGCGGCAACAGGCATCTCCGTGCTGCTGGTCGACGATCATCCGATCGTGCGGCAAGGCTACCGCCGCGT
GCTGGAGAGTCAGGGCGATCTCCATGTCGTGGCGGAGGCCGACAACGCGGCCGACGCCTACGGCGCCTTCAAGGCGCACG
ACCCTGATGTCGTCTTGCTGGACATCTCGATGCCCGGCGCGAGCGGGCTGGAGGCGATCCGCAACATCCGCGCGCGCAGC
CCGCGGGCGCGCATCCTCGTCTTCACCATGCACAACGAAGCCGTGCTGGTGAAAGCCGCCTTCAGTGCCGGCGCGAGCGG
CTTCGTCACCAAGAGCAGCGAACCCTCCGCGGTCGTCACCGCGATCCGCAGCGTTGCGCGCGGCGAGCGTGCCATGAGCG
ACGACATCGCGCATATCCTGGCCGAGGACAGCCTGTCGGCCGGCTCGGCGCTGGACCAACTGGGTGAGCGCGAAATCGAG
ATCCTGCGCCAATTCGCCGGCGGCGCGACGACCGAGCAGATTGCCGCGCATCTCAATCTCAGCGTCAAGACGGTGCAGAA
CTATCACTATCTGATCAAGACCAAGACCGGCGCGCGCACCGACGCGCAGCTCGTGCGGCTGGCCGCGAGCTGCGGGCTGA
CTCGGATCTAG

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(11-123)

Bacterial regulatory proteins, luxR family (GerE)

(153-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

39.109

93.519

0.366
  letA Legionella pneumophila strain ERS1305867

39.109

93.519

0.366