Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   QIH94_RS02620 Genome accession   NZ_CP126006
Coordinates   524352..524954 (+) Length   200 a.a.
NCBI ID   WP_304491846.1    Uniprot ID   -
Organism   Bradyrhizobium japonicum strain S06K-Bj     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 519352..529954
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QIH94_RS02595 (QIH94_02595) - 520023..520664 (-) 642 WP_248880386.1 HD domain-containing protein -
  QIH94_RS02600 (QIH94_02600) - 520769..521770 (+) 1002 WP_028160127.1 GlxA family transcriptional regulator -
  QIH94_RS02610 (QIH94_02610) - 522068..523906 (+) 1839 WP_304491847.1 DNA polymerase III subunit gamma/tau -
  QIH94_RS02615 (QIH94_02615) - 524030..524350 (+) 321 WP_028148995.1 YbaB/EbfC family nucleoid-associated protein -
  QIH94_RS02620 (QIH94_02620) recR 524352..524954 (+) 603 WP_304491846.1 recombination mediator RecR Machinery gene
  QIH94_RS02625 (QIH94_02625) - 524981..525418 (+) 438 WP_028160130.1 hypothetical protein -
  QIH94_RS02630 (QIH94_02630) - 525559..526923 (-) 1365 WP_014491381.1 MFS transporter -
  QIH94_RS02635 (QIH94_02635) - 527115..528314 (-) 1200 WP_264621609.1 DNA recombination protein RmuC -
  QIH94_RS02640 (QIH94_02640) def 528485..529009 (+) 525 WP_014491383.1 peptide deformylase -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 21301.58 Da        Isoelectric Point: 6.3277

>NTDB_id=766145 QIH94_RS02620 WP_304491846.1 524352..524954(+) (recR) [Bradyrhizobium japonicum strain S06K-Bj]
MGSVAGPEIERLVQLLARLPGLGPRSARRAALHLIKKREALMMPLSSALQVALDKVQVCKTCGNIDTQNPCTVCTDPKRD
PAIIVVVADVADLWALERANATQGRYHVLGATLSPLDGVGPQDLTIDALVARAHAAEANEIILALNATVDGQTTAHYITD
LLQDANVKVTRLAHGVPVGGELDYLDEGTLSAAMRQRTLF

Nucleotide


Download         Length: 603 bp        

>NTDB_id=766145 QIH94_RS02620 WP_304491846.1 524352..524954(+) (recR) [Bradyrhizobium japonicum strain S06K-Bj]
ATGGGTTCGGTTGCAGGTCCCGAAATCGAGCGGCTGGTCCAGCTTCTCGCACGGCTGCCGGGCTTGGGCCCGCGCTCCGC
GCGGCGTGCGGCGCTGCATCTGATCAAGAAGCGCGAAGCGCTGATGATGCCGCTGTCTTCGGCCCTGCAGGTCGCGCTCG
ACAAGGTCCAGGTCTGCAAGACCTGCGGCAACATCGACACGCAAAATCCCTGCACGGTCTGCACCGATCCGAAGCGCGAT
CCCGCCATCATCGTCGTGGTCGCCGATGTCGCCGACCTCTGGGCGCTCGAGCGGGCCAATGCCACTCAAGGGCGCTATCA
CGTGCTGGGCGCGACCTTGTCGCCGCTCGACGGCGTCGGCCCTCAGGACCTCACCATCGACGCGCTGGTGGCGCGCGCGC
ACGCTGCCGAGGCAAATGAGATCATCCTGGCGCTGAACGCGACGGTCGACGGCCAGACCACGGCGCACTACATCACCGAC
CTGCTTCAGGACGCCAACGTAAAAGTAACCCGGCTGGCCCATGGTGTGCCGGTCGGTGGCGAGCTTGATTATCTCGACGA
AGGTACGTTATCGGCCGCGATGCGGCAGCGGACCCTGTTCTAG

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(83-173)

RecR protein (RecR_ZnF)

(44-80)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

43.979

95.5

0.42
  recR Bacillus subtilis subsp. subtilis str. 168

41.146

96

0.395
  recR Streptococcus pneumoniae R6

37.895

95

0.36