Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK/comK1   Type   Regulator
Locus tag   O3S98_RS08540 Genome accession   NZ_CP114456
Coordinates   1814572..1815147 (-) Length   191 a.a.
NCBI ID   WP_001829272.1    Uniprot ID   -
Organism   Staphylococcus epidermidis strain SE 4.6     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1809572..1820147
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O3S98_RS08490 (O3S98_08495) - 1809714..1809929 (+) 216 WP_060545986.1 NINE protein -
  O3S98_RS08495 (O3S98_08500) - 1810582..1810740 (+) 159 WP_002446129.1 replication/maintenance protein RepL -
  O3S98_RS08500 (O3S98_08505) - 1810810..1811427 (-) 618 WP_002458044.1 LysE family transporter -
  O3S98_RS08505 (O3S98_08510) - 1811431..1812378 (-) 948 WP_060545988.1 fatty acid desaturase family protein -
  O3S98_RS08510 (O3S98_08515) - 1812589..1812824 (-) 236 Protein_1642 recombinase -
  O3S98_RS08515 (O3S98_08520) - 1813043..1813279 (-) 237 WP_002446124.1 plasmid recombination protein -
  O3S98_RS08520 - 1813237..1813377 (-) 141 WP_080035572.1 plasmid recombination protein -
  O3S98_RS08525 (O3S98_08525) - 1813361..1813501 (-) 141 WP_002490039.1 plasmid recombination protein -
  O3S98_RS08540 (O3S98_08540) comK/comK1 1814572..1815147 (-) 576 WP_001829272.1 competence protein ComK Regulator
  O3S98_RS08545 (O3S98_08545) - 1815362..1815580 (+) 219 WP_001829292.1 IDEAL domain-containing protein -
  O3S98_RS08550 (O3S98_08550) - 1815658..1816644 (-) 987 WP_002458040.1 lipoate--protein ligase -
  O3S98_RS08555 (O3S98_08555) - 1816849..1817034 (+) 186 WP_001829339.1 DUF2187 family protein -
  O3S98_RS08560 (O3S98_08560) - 1817040..1817642 (+) 603 WP_002458039.1 CPBP family glutamic-type intramembrane protease -
  O3S98_RS08565 (O3S98_08565) - 1817745..1819250 (-) 1506 WP_060545991.1 bifunctional UDP-sugar hydrolase/5'-nucleotidase -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 22782.87 Da        Isoelectric Point: 9.2887

>NTDB_id=766065 O3S98_RS08540 WP_001829272.1 1814572..1815147(-) (comK/comK1) [Staphylococcus epidermidis strain SE 4.6]
MTHLPETIYVIRKGDMVIRPKYDEYQQTNGTEIIRFDQTRKESPFKVQRIIERSCKFYGNNYISKKAETNRITGISSKPP
ILLTPLFPTYFFPTHSDRQEENIWINMHYIENVKELKNRKSKIIFANGDSLTLNVSFHSLWHQYTNAIIYYYMVDKQSRM
KSNNPEQPIDYNQSSLNIFEALSRYSLFEEN

Nucleotide


Download         Length: 576 bp        

>NTDB_id=766065 O3S98_RS08540 WP_001829272.1 1814572..1815147(-) (comK/comK1) [Staphylococcus epidermidis strain SE 4.6]
ATGACACATTTACCCGAAACGATTTATGTTATACGAAAAGGTGATATGGTAATACGACCTAAATATGATGAATATCAGCA
GACAAATGGTACTGAGATTATCAGATTTGATCAAACCCGAAAAGAAAGTCCATTCAAAGTACAGAGAATTATCGAAAGAT
CATGTAAGTTTTACGGCAATAATTATATTAGTAAAAAAGCAGAAACGAATCGTATTACTGGAATTTCTAGTAAACCACCT
ATTTTACTTACACCTCTTTTTCCTACTTACTTTTTTCCAACTCACTCGGACCGTCAAGAAGAAAATATATGGATTAATAT
GCATTATATTGAAAATGTTAAAGAACTTAAAAATCGTAAGAGTAAAATAATTTTTGCGAATGGTGATTCTTTAACACTCA
ATGTATCATTTCATAGTTTGTGGCATCAATACACCAATGCAATCATCTATTATTACATGGTAGATAAGCAATCACGAATG
AAATCTAACAACCCTGAACAACCTATTGACTATAATCAGTCCTCCTTAAATATTTTCGAGGCGCTTTCACGCTACTCTCT
TTTTGAAGAAAATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(7-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK/comK1 Staphylococcus aureus MW2

76.757

96.859

0.743
  comK/comK1 Staphylococcus aureus N315

76.757

96.859

0.743