Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   O3S98_RS07580 Genome accession   NZ_CP114456
Coordinates   1610241..1611116 (-) Length   291 a.a.
NCBI ID   WP_060545819.1    Uniprot ID   -
Organism   Staphylococcus epidermidis strain SE 4.6     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1605241..1616116
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O3S98_RS07565 (O3S98_07565) xerC 1605546..1606436 (-) 891 WP_060545815.1 tyrosine recombinase XerC -
  O3S98_RS07570 (O3S98_07570) trmFO 1606660..1607967 (-) 1308 WP_002473845.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  O3S98_RS07575 (O3S98_07575) topA 1607992..1610061 (-) 2070 WP_060545817.1 type I DNA topoisomerase -
  O3S98_RS07580 (O3S98_07580) dprA 1610241..1611116 (-) 876 WP_060545819.1 DNA-processing protein DprA Machinery gene
  O3S98_RS07585 (O3S98_07585) - 1611441..1611656 (-) 216 Protein_1458 transposase -
  O3S98_RS07590 (O3S98_07590) sucD 1611906..1612814 (-) 909 WP_002446283.1 succinate--CoA ligase subunit alpha -
  O3S98_RS07595 (O3S98_07595) sucC 1612836..1614002 (-) 1167 WP_002439496.1 ADP-forming succinate--CoA ligase subunit beta -
  O3S98_RS07600 (O3S98_07600) - 1614110..1614880 (-) 771 WP_060545821.1 ribonuclease HII -
  O3S98_RS07605 (O3S98_07605) ylqF 1614885..1615748 (-) 864 WP_060545823.1 ribosome biogenesis GTPase YlqF -

Sequence

Protein


Download         Length: 291 a.a.        Molecular weight: 34018.16 Da        Isoelectric Point: 9.7522

>NTDB_id=766064 O3S98_RS07580 WP_060545819.1 1610241..1611116(-) (dprA) [Staphylococcus epidermidis strain SE 4.6]
MIQHTMLKLYWANFTTAQLHHLTRKYPVFLSENEFHQHDMIKRWLTERNSERLWNKYERFKKLKLMDIIKEMKKANVSFT
TYFDDNYPSLCKEMYDYPYVIFYKGNPQFFNHSHSLAVIGSRNATQYTSQSLNYLFPSFRQLNMAIVSGLARGADSLAHQ
TALKYFLPTIGVLGFGHCYHYPKATLNLRTKVERNGLVISEYPPFSPINKYKFPERNRLISGLSRGVLITEAEERSGSQI
TIDCALEQNRNVYVLPGSMFNKMTKGNLRRINEGAQVVIDESSILIDYLFM

Nucleotide


Download         Length: 876 bp        

>NTDB_id=766064 O3S98_RS07580 WP_060545819.1 1610241..1611116(-) (dprA) [Staphylococcus epidermidis strain SE 4.6]
TTGATACAACATACGATGTTAAAACTATATTGGGCAAATTTCACTACAGCACAACTTCATCATCTTACACGTAAATATCC
CGTCTTTCTATCAGAAAACGAATTTCATCAACATGACATGATAAAAAGGTGGCTTACAGAGCGTAATTCTGAAAGACTAT
GGAACAAATATGAACGTTTCAAAAAATTAAAGCTGATGGACATTATTAAAGAAATGAAAAAAGCAAATGTTAGTTTTACG
ACATACTTCGATGATAACTACCCTTCTCTTTGCAAAGAAATGTATGATTATCCTTATGTGATATTCTACAAAGGAAATCC
ACAGTTCTTTAATCATTCTCACTCTCTAGCTGTAATTGGCTCACGTAATGCCACACAATATACAAGTCAATCTTTAAACT
ATCTTTTTCCTTCATTTAGACAATTAAATATGGCGATTGTTTCTGGATTAGCGCGTGGCGCAGATAGTTTAGCACATCAA
ACCGCACTTAAATACTTTTTACCAACTATTGGCGTACTTGGATTTGGACATTGTTATCATTATCCTAAAGCAACCTTAAA
TTTAAGAACTAAAGTTGAAAGAAATGGCTTAGTGATAAGTGAATATCCACCATTTTCTCCCATAAATAAGTATAAATTTC
CTGAAAGAAACAGACTTATAAGTGGTCTGTCTAGAGGGGTTCTTATAACTGAGGCTGAAGAAAGAAGTGGTAGTCAAATT
ACTATTGATTGTGCTTTAGAGCAAAATAGAAATGTTTATGTTCTACCTGGTTCAATGTTCAACAAAATGACTAAAGGCAA
TTTACGAAGGATAAATGAAGGTGCTCAAGTTGTTATAGATGAAAGTAGTATCTTAATTGATTATCTATTTATGTAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(72-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus MW2

57.639

98.969

0.57
  dprA Staphylococcus aureus N315

57.639

98.969

0.57