Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   O3S98_RS03965 Genome accession   NZ_CP114456
Coordinates   838923..839318 (+) Length   131 a.a.
NCBI ID   WP_002447777.1    Uniprot ID   -
Organism   Staphylococcus epidermidis strain SE 4.6     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 833923..844318
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O3S98_RS03940 (O3S98_03945) - 835342..835746 (+) 405 WP_002447782.1 F0F1 ATP synthase subunit epsilon -
  O3S98_RS03945 (O3S98_03950) - 835895..836128 (+) 234 WP_002495678.1 DUF1146 family protein -
  O3S98_RS03950 (O3S98_03955) murA 836238..837503 (+) 1266 WP_002458708.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  O3S98_RS03955 (O3S98_03960) fabZ 837537..837974 (+) 438 WP_060546047.1 3-hydroxyacyl-ACP dehydratase FabZ -
  O3S98_RS03960 (O3S98_03965) - 838292..838732 (-) 441 WP_002458706.1 YwpF-like family protein -
  O3S98_RS03965 (O3S98_03970) ssb 838923..839318 (+) 396 WP_002447777.1 single-stranded DNA-binding protein Machinery gene
  O3S98_RS03970 (O3S98_03975) - 839706..840365 (+) 660 WP_060546045.1 transglycosylase family protein -
  O3S98_RS03975 (O3S98_03980) tenA 840649..841338 (+) 690 WP_002447775.1 thiaminase II -
  O3S98_RS03980 (O3S98_03985) thiD 841331..842152 (+) 822 WP_060546043.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  O3S98_RS03985 (O3S98_03990) thiM 842145..842933 (+) 789 WP_060546041.1 hydroxyethylthiazole kinase -
  O3S98_RS03990 (O3S98_03995) thiE 842939..843577 (+) 639 WP_002458704.1 thiamine phosphate synthase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15144.99 Da        Isoelectric Point: 5.2661

>NTDB_id=766046 O3S98_RS03965 WP_002447777.1 838923..839318(+) (ssb) [Staphylococcus epidermidis strain SE 4.6]
MLNKIVIVGRMTKDAQIYEKEDNKIATFCVATERNYKDDNNEISSDYLLCKAFGKTATNIEKYTSQGTLVGITGQMRSRK
YEKEGQTHFVTELYVETIKFMSPKNKNNETPSDNQFENNTYQPDDLEIIHI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=766046 O3S98_RS03965 WP_002447777.1 838923..839318(+) (ssb) [Staphylococcus epidermidis strain SE 4.6]
ATGTTAAATAAAATAGTCATTGTTGGTAGAATGACGAAAGATGCTCAAATATATGAAAAGGAGGATAACAAAATAGCAAC
ATTTTGCGTTGCTACAGAAAGAAACTACAAAGATGATAATAACGAAATTTCTTCAGATTATTTGCTTTGTAAAGCTTTCG
GTAAAACTGCCACTAATATTGAAAAGTACACTAGTCAAGGTACTTTAGTAGGTATAACTGGGCAAATGCGTTCAAGAAAA
TATGAAAAAGAAGGCCAAACACATTTTGTTACAGAATTATACGTTGAAACAATTAAATTCATGTCCCCAAAAAATAAAAA
CAATGAAACTCCCTCTGATAATCAATTTGAAAACAACACTTATCAACCTGATGATTTAGAAATAATTCATATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

74.046

100

0.74
  ssb Staphylococcus aureus MW2

73.282

100

0.733