Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrC   Type   Machinery gene
Locus tag   QNK07_RS14670 Genome accession   NZ_CP125981
Coordinates   2804556..2806328 (-) Length   590 a.a.
NCBI ID   WP_003229562.1    Uniprot ID   -
Organism   Bacillus subtilis strain ZKY06     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2799556..2811328
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNK07_RS14650 (QNK07_14675) sdhA 2799775..2801535 (-) 1761 WP_003229567.1 succinate dehydrogenase flavoprotein subunit -
  QNK07_RS14655 (QNK07_14680) sdhC 2801569..2802177 (-) 609 WP_003222512.1 succinate dehydrogenase cytochrome B558 -
  QNK07_RS14660 (QNK07_14685) yslB 2802470..2802916 (+) 447 WP_003222508.1 YslB family protein -
  QNK07_RS14665 (QNK07_14690) lysCA 2802960..2804186 (-) 1227 WP_003229564.1 aspartate kinase -
  QNK07_RS14670 (QNK07_14695) uvrC 2804556..2806328 (-) 1773 WP_003229562.1 excinuclease ABC subunit UvrC Machinery gene
  QNK07_RS14675 (QNK07_14700) trxA 2806464..2806778 (-) 315 WP_003222500.1 thioredoxin -
  QNK07_RS14680 (QNK07_14705) abfB 2807101..2808588 (-) 1488 WP_015251517.1 alpha-L-arabinofuranosidase AbfB -
  QNK07_RS14685 (QNK07_14710) etfA 2808803..2809780 (-) 978 WP_003229553.1 electron transfer flavoprotein subunit alpha -
  QNK07_RS14690 (QNK07_14715) etfB 2809816..2810589 (-) 774 WP_014480500.1 electron transfer flavoprotein subunit beta -

Sequence

Protein


Download         Length: 590 a.a.        Molecular weight: 68534.36 Da        Isoelectric Point: 9.4732

>NTDB_id=765732 QNK07_RS14670 WP_003229562.1 2804556..2806328(-) (uvrC) [Bacillus subtilis strain ZKY06]
MNKQLKEKLALLPDQPGCYLMKDRQQTVIYVGKAKVLKNRVRSYFTGSHDAKTQRLVTEIEDFEYIVTSSNLEALILEMN
LIKKHDPKYNVMLKDDKTYPFIKLTHERHPRLIVTRNVKKDKGRYFGPYPNVQAARETKKLLDRLYPLRKCSKLPDRVCL
YYHLGQCLAPCVKDISEETNRELVESITRFLRGGYNEVKKELEEKMHEAAENLEFERAKELRDQMAHIESTMEKQKMTMN
DLVDRDVFAYAYDKGWMCVQVFFIRQGKLIERDVSMFPLYQEADEEFLTFIGQFYSKNNHFLPKEILVPDSVDQSMIEQL
LETNVHQPKKGPKKELLMLAHKNAKIALKEKFSLIERDEERSIGAVQKLGEALNIYTPHRIEAFDNSNIQGTNPVSAMIV
FIDGKPYKKEYRKYKIKTVTGPDDYGSMREVVRRRYTRVLRENLPLPDLIIIDGGKGQINAARDVIENELGLDIPIAGLA
KDEKHRTSNLLIGDPLEVVYLERNSQEFYLLQRIQDEVHRFAISFHRQIRGKSAFQSVLDDIPGIGEKRKKMLLKHFGSV
KKMKEASLEDIKKAGVPTAAAQLLYDKLQK

Nucleotide


Download         Length: 1773 bp        

>NTDB_id=765732 QNK07_RS14670 WP_003229562.1 2804556..2806328(-) (uvrC) [Bacillus subtilis strain ZKY06]
ATGAACAAACAACTGAAAGAAAAACTCGCCCTCCTTCCTGATCAACCGGGTTGTTATCTCATGAAGGACCGGCAGCAGAC
TGTGATCTACGTAGGGAAAGCAAAAGTGCTGAAAAACAGAGTGCGCTCCTACTTCACCGGTTCTCACGACGCGAAAACCC
AAAGGCTTGTGACGGAAATCGAGGATTTTGAATATATCGTGACGTCCTCCAATCTTGAAGCGCTTATTTTAGAAATGAAT
CTGATCAAAAAGCATGATCCGAAATACAACGTCATGCTCAAAGACGACAAAACCTATCCTTTCATAAAACTCACCCATGA
ACGCCACCCAAGGCTGATTGTCACACGCAATGTCAAAAAAGACAAAGGGCGCTATTTCGGGCCGTATCCGAATGTACAGG
CAGCAAGGGAAACAAAAAAACTGCTCGACCGTCTGTATCCTCTCAGAAAATGCTCCAAGCTCCCGGACAGAGTGTGCCTT
TACTATCATCTGGGCCAATGCCTCGCTCCGTGTGTAAAGGATATTTCCGAAGAGACGAACAGAGAGCTGGTTGAAAGCAT
TACACGTTTCTTAAGGGGCGGCTATAATGAGGTCAAAAAAGAGCTTGAAGAGAAAATGCATGAAGCTGCTGAGAATCTTG
AGTTTGAACGAGCAAAAGAGCTTCGTGACCAAATGGCCCATATTGAATCAACGATGGAAAAACAAAAAATGACGATGAAC
GATCTAGTCGACCGTGATGTGTTCGCGTACGCGTACGATAAGGGCTGGATGTGCGTGCAGGTCTTTTTCATCCGCCAAGG
AAAGCTCATTGAACGCGATGTCAGCATGTTCCCGCTTTATCAGGAAGCAGATGAAGAGTTCCTCACGTTCATCGGGCAGT
TCTATTCAAAAAACAACCACTTCCTTCCGAAGGAGATTTTAGTTCCGGACAGCGTAGATCAATCTATGATCGAGCAGCTG
CTGGAAACAAACGTTCACCAGCCGAAAAAAGGCCCGAAAAAAGAACTGCTCATGCTTGCCCATAAAAATGCGAAAATCGC
ATTGAAAGAAAAATTCTCTTTAATCGAACGGGACGAGGAGCGTTCAATCGGGGCAGTGCAGAAACTAGGTGAGGCATTAA
ATATTTATACGCCGCACAGAATTGAAGCGTTTGATAACTCAAATATACAGGGGACAAACCCGGTTTCCGCGATGATTGTG
TTTATCGATGGCAAACCATACAAAAAGGAATACCGCAAATATAAAATCAAAACTGTTACAGGGCCGGATGATTACGGTTC
TATGAGAGAGGTTGTCAGAAGACGCTATACGAGAGTGCTTCGTGAGAATCTGCCGCTGCCCGATCTGATCATCATTGACG
GAGGAAAAGGGCAGATCAACGCAGCAAGGGATGTCATTGAAAATGAACTCGGCTTGGATATCCCGATCGCCGGTTTAGCG
AAAGATGAAAAACACAGAACCTCAAATTTACTGATCGGTGATCCGCTGGAGGTGGTGTATCTGGAACGAAACAGCCAGGA
ATTTTACCTCCTGCAGCGCATTCAGGACGAGGTGCACCGTTTTGCAATCAGTTTTCACAGGCAAATCCGCGGAAAAAGCG
CGTTTCAATCCGTTTTGGACGACATCCCGGGTATCGGAGAGAAAAGAAAGAAAATGCTGTTAAAGCATTTCGGTTCCGTT
AAAAAAATGAAGGAAGCAAGCCTTGAGGACATCAAAAAAGCCGGTGTTCCCACAGCGGCGGCTCAGCTCCTTTACGACAA
ATTGCAAAAATAA

Domains

Predicted by InterProScan.

GIY-YIG catalytic domain (GIY-YIG)

(16-90)

UvrB/uvrC motif (UVR)

(197-229)

UvrC RNAse H endonuclease domain (UvrC_RNaseH_dom)

(373-523)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrC Streptococcus pneumoniae TIGR4

59.184

99.661

0.59
  uvrC Streptococcus pneumoniae R6

58.844

99.661

0.586
  uvrC Streptococcus pneumoniae D39

58.844

99.661

0.586