Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   QM337_RS02140 Genome accession   NZ_CP125903
Coordinates   459369..459965 (+) Length   198 a.a.
NCBI ID   WP_283532056.1    Uniprot ID   -
Organism   Staphylococcus aureus strain CHAL1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 454369..464965
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QM337_RS02110 (QM337_02110) treR 455296..456024 (+) 729 WP_001118676.1 trehalose operon repressor -
  QM337_RS02120 (QM337_02120) - 456425..456526 (+) 102 WP_001791573.1 hypothetical protein -
  QM337_RS02125 (QM337_02125) - 456665..457189 (+) 525 WP_001167834.1 N-acetyltransferase -
  QM337_RS02130 (QM337_02130) dnaX 457258..458955 (+) 1698 WP_001109044.1 DNA polymerase III subunit gamma/tau -
  QM337_RS02135 (QM337_02135) - 459045..459362 (+) 318 WP_001213992.1 YbaB/EbfC family nucleoid-associated protein -
  QM337_RS02140 (QM337_02140) recR 459369..459965 (+) 597 WP_283532056.1 recombination mediator RecR Machinery gene
  QM337_RS02145 (QM337_02145) - 460307..460382 (+) 76 Protein_424 hypothetical protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22110.58 Da        Isoelectric Point: 4.8523

>NTDB_id=765348 QM337_RS02140 WP_283532056.1 459369..459965(+) (recR) [Staphylococcus aureus strain CHAL1]
MHYPEPISKLINSFMKLPGIGPKTAQRLAFHTLDMKEDDVVQFAKALVDVKRELTYCSVCGHITENDPCYICEDKQRDRS
VICVVEDDKDVIAMEKMREYKGLYHVLHGSISPMDGIGPEDINIPSLIERLKNDEVSELILAMNPNLEGESTAMYISRLV
KPIGIKVTRLAQGLSVGGDLEYADEVTLSKAIAGRIEM

Nucleotide


Download         Length: 597 bp        

>NTDB_id=765348 QM337_RS02140 WP_283532056.1 459369..459965(+) (recR) [Staphylococcus aureus strain CHAL1]
ATGCATTATCCAGAACCTATATCAAAGCTTATTAATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACG
TCTGGCTTTTCATACCTTAGATATGAAAGAAGACGATGTTGTTCAGTTTGCCAAAGCATTAGTAGATGTTAAAAGAGAAT
TAACATATTGTAGCGTATGTGGTCACATTACTGAAAATGATCCATGTTATATTTGTGAAGATAAGCAAAGAGATCGTTCA
GTTATTTGTGTTGTGGAAGATGACAAAGATGTCATAGCTATGGAAAAAATGAGAGAATACAAAGGTTTATATCACGTTTT
ACATGGGTCTATTTCGCCTATGGATGGAATTGGACCAGAAGATATTAATATTCCTTCATTGATTGAACGCTTGAAAAACG
ATGAAGTTAGCGAATTAATCTTAGCTATGAACCCGAACTTAGAGGGGGAATCTACAGCCATGTATATTTCTAGATTAGTT
AAGCCTATAGGTATCAAAGTGACGAGATTAGCACAAGGGTTATCTGTAGGTGGCGATTTAGAGTATGCTGACGAAGTAAC
ATTATCTAAAGCAATCGCAGGTAGAATAGAAATGTAA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(80-171)

RecR protein (RecR_ZnF)

(40-78)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

76.768

100

0.768
  recR Streptococcus pneumoniae R6

63.131

100

0.631
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

48.205

98.485

0.475