Detailed information
Bioinformatically predicted
Overview
| Name | xcpV | Type | Machinery gene |
| Locus tag | H7K53_RS08570 | Genome accession | NZ_AP022077 |
| Coordinates | 1789131..1789511 (+) | Length | 126 a.a. |
| NCBI ID | WP_004738906.1 | Uniprot ID | - |
| Organism | Acinetobacter baumannii strain WP4-W18-ESBL-11 | ||
| Function | pseudopilus assembly (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1784131..1794511
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| H7K53_RS08540 (WP4W18E11_16550) | kdsB | 1785034..1785795 (+) | 762 | WP_000680701.1 | 3-deoxy-manno-octulosonate cytidylyltransferase | - |
| H7K53_RS08545 (WP4W18E11_16560) | - | 1785807..1786787 (+) | 981 | WP_001075418.1 | DNA polymerase III subunit delta' | - |
| H7K53_RS08550 (WP4W18E11_16570) | - | 1786799..1787140 (+) | 342 | WP_001183024.1 | PilZ domain-containing protein | - |
| H7K53_RS08555 (WP4W18E11_16580) | - | 1787158..1787931 (+) | 774 | WP_000497298.1 | TatD family hydrolase | - |
| H7K53_RS08560 (WP4W18E11_16590) | - | 1787969..1788577 (+) | 609 | WP_000375838.1 | TetR/AcrR family transcriptional regulator | - |
| H7K53_RS08565 (WP4W18E11_16600) | - | 1788587..1789141 (+) | 555 | WP_000841379.1 | type II secretion system protein | - |
| H7K53_RS08570 (WP4W18E11_16610) | xcpV | 1789131..1789511 (+) | 381 | WP_004738906.1 | type II secretion system minor pseudopilin GspI | Machinery gene |
| H7K53_RS08575 (WP4W18E11_16620) | xcpW | 1789511..1790212 (+) | 702 | WP_000594574.1 | type II secretion system minor pseudopilin GspJ | Machinery gene |
| H7K53_RS08580 (WP4W18E11_16630) | gspK | 1790212..1791171 (+) | 960 | WP_000301477.1 | type II secretion system minor pseudopilin GspK | - |
| H7K53_RS08585 (WP4W18E11_16640) | - | 1791401..1791997 (+) | 597 | WP_004738911.1 | 6-carboxytetrahydropterin synthase | - |
| H7K53_RS08590 (WP4W18E11_16650) | ung | 1792048..1792761 (+) | 714 | WP_001177530.1 | uracil-DNA glycosylase | - |
| H7K53_RS08595 (WP4W18E11_16660) | - | 1792758..1793882 (+) | 1125 | WP_001983908.1 | enoyl-CoA hydratase/isomerase family protein | - |
| H7K53_RS08600 (WP4W18E11_16670) | tadA | 1793889..1794392 (+) | 504 | WP_031946509.1 | tRNA adenosine(34) deaminase TadA | - |
Sequence
Protein
Download Length: 126 a.a. Molecular weight: 13973.21 Da Isoelectric Point: 9.8004
>NTDB_id=76533 H7K53_RS08570 WP_004738906.1 1789131..1789511(+) (xcpV) [Acinetobacter baumannii strain WP4-W18-ESBL-11]
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISLNVQKIDLQVSLYDPDKGKVQNGITHIVFFNYPVKAK
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISLNVQKIDLQVSLYDPDKGKVQNGITHIVFFNYPVKAK
Nucleotide
Download Length: 381 bp
>NTDB_id=76533 H7K53_RS08570 WP_004738906.1 1789131..1789511(+) (xcpV) [Acinetobacter baumannii strain WP4-W18-ESBL-11]
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCAGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAATGCAGTACACGCAGTCCACTTCAAATGCAATTTTGCGAACCAAAGCTCAGTTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACCCAGAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCTGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACACATATAGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCAGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAATGCAGTACACGCAGTCCACTTCAAATGCAATTTTGCGAACCAAAGCTCAGTTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACCCAGAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCTGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACACATATAGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| xcpV | Acinetobacter baumannii D1279779 |
98.413 |
100 |
0.984 |