Detailed information NTG0076534

Bioinformatically predicted

Overview

• Name: xcpW
• Type: Machinery gene
• Locus tag: H7K53_RS08575
• Genome accession: NZ_AP022077
• Coordinates: 1789511..1790212 (+)
• Length: 233 a.a.
• NCBI ID: WP_000594574.1
• Uniprot ID: -
• Organism: Acinetobacter baumannii strain WP4-W18-ESBL-11
• Function: pseudopilus assembly (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1784511..1795212

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
H7K53_RS08540 (WP4W18E11_16550)	kdsB	1785034..1785795 (+)	762	WP_000680701.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
H7K53_RS08545 (WP4W18E11_16560)	-	1785807..1786787 (+)	981	WP_001075418.1	DNA polymerase III subunit delta'	-
H7K53_RS08550 (WP4W18E11_16570)	-	1786799..1787140 (+)	342	WP_001183024.1	PilZ domain-containing protein	-
H7K53_RS08555 (WP4W18E11_16580)	-	1787158..1787931 (+)	774	WP_000497298.1	TatD family hydrolase	-
H7K53_RS08560 (WP4W18E11_16590)	-	1787969..1788577 (+)	609	WP_000375838.1	TetR/AcrR family transcriptional regulator	-
H7K53_RS08565 (WP4W18E11_16600)	-	1788587..1789141 (+)	555	WP_000841379.1	type II secretion system protein	-
H7K53_RS08570 (WP4W18E11_16610)	xcpV	1789131..1789511 (+)	381	WP_004738906.1	type II secretion system minor pseudopilin GspI	Machinery gene
H7K53_RS08575 (WP4W18E11_16620)	xcpW	1789511..1790212 (+)	702	WP_000594574.1	type II secretion system minor pseudopilin GspJ	Machinery gene
H7K53_RS08580 (WP4W18E11_16630)	gspK	1790212..1791171 (+)	960	WP_000301477.1	type II secretion system minor pseudopilin GspK	-
H7K53_RS08585 (WP4W18E11_16640)	-	1791401..1791997 (+)	597	WP_004738911.1	6-carboxytetrahydropterin synthase	-
H7K53_RS08590 (WP4W18E11_16650)	ung	1792048..1792761 (+)	714	WP_001177530.1	uracil-DNA glycosylase	-
H7K53_RS08595 (WP4W18E11_16660)	-	1792758..1793882 (+)	1125	WP_001983908.1	enoyl-CoA hydratase/isomerase family protein	-
H7K53_RS08600 (WP4W18E11_16670)	tadA	1793889..1794392 (+)	504	WP_031946509.1	tRNA adenosine(34) deaminase TadA	-
H7K53_RS08605 (WP4W18E11_16680)	-	1794462..1794905 (+)	444	WP_001246675.1	SRPBCC family protein	-

Sequence

Protein

• Length: 233 a.a.
• Molecular weight: 26630.57 Da
• Isoelectric Point: 9.5501

>NTDB_id=76534 H7K53_RS08575 WP_000594574.1 1789511..1790212(+) (xcpW) [Acinetobacter baumannii strain WP4-W18-ESBL-11]
MIKNKYIHIRSFAARLAARSSSARLTRASGFTLVELLVAIAIFAVLSLLGWKIFDYLLKVRDRNAEHEVHLFELQDAYQQ
ILRDTLQIIPLSANQGGQLHSALEIDNQILRFSKAGVTDPLKQGLSPFERIEYRYDADQKKLYRLKYTNLNTSNREQPLS
STLLNQVDQYQIMVLTPQEVTKWPEVNIDPTKPNELKKLPKGIKIQLTVAGVNYEWIYSLNQGDLSLSQEGNS

Nucleotide

• Length: 702 bp

>NTDB_id=76534 H7K53_RS08575 WP_000594574.1 1789511..1790212(+) (xcpW) [Acinetobacter baumannii strain WP4-W18-ESBL-11]
ATGATAAAAAATAAATATATTCACATCCGAAGCTTTGCTGCTCGCCTTGCAGCACGATCGAGCAGTGCTCGATTAACTCG
CGCCTCAGGATTTACTTTGGTTGAATTGTTAGTCGCGATCGCTATCTTTGCGGTTTTATCTTTATTGGGGTGGAAAATTT
TCGATTACTTGCTCAAAGTTCGTGATCGTAATGCCGAACATGAAGTGCATTTATTTGAATTACAAGATGCTTATCAACAA
ATTCTTCGTGATACTTTGCAGATTATCCCTTTATCCGCAAACCAAGGTGGTCAACTTCATTCAGCTTTAGAAATCGATAA
TCAAATTTTACGTTTTAGCAAAGCAGGCGTAACGGATCCTTTAAAACAAGGCTTATCACCATTTGAACGAATTGAATATC
GTTATGATGCAGACCAAAAAAAGTTATATCGTCTTAAATATACAAATTTGAATACTTCGAACAGAGAGCAACCTTTATCG
AGTACTTTGTTAAATCAAGTCGACCAATATCAGATTATGGTTTTGACTCCGCAAGAAGTCACAAAATGGCCCGAGGTTAA
TATTGATCCAACGAAACCTAATGAGTTAAAAAAATTACCGAAAGGGATAAAAATCCAACTTACAGTCGCTGGTGTAAATT
ATGAGTGGATTTATAGCTTAAATCAGGGTGACTTATCGCTTTCGCAGGAAGGTAATTCATAA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein J (T2SSJ) (83-212)

• Prokaryotic N-terminal methylation motif (N_methyl) (27-49)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
xcpW	Acinetobacter baumannii D1279779	98.283	100	0.983