Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   O1449_RS13770 Genome accession   NZ_CP114264
Coordinates   2869597..2870283 (+) Length   228 a.a.
NCBI ID   WP_269238586.1    Uniprot ID   A0A9E9L451
Organism   Acinetobacter sp. TR3     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2864597..2875283
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O1449_RS13755 (O1449_13770) - 2865617..2866597 (-) 981 WP_269238583.1 putative solute-binding protein -
  O1449_RS13760 (O1449_13775) - 2866728..2867540 (-) 813 WP_269238584.1 NAD-dependent epimerase/dehydratase family protein -
  O1449_RS13765 (O1449_13780) recG 2867559..2869604 (+) 2046 WP_269238585.1 ATP-dependent DNA helicase RecG -
  O1449_RS13770 (O1449_13785) comF 2869597..2870283 (+) 687 WP_269238586.1 phosphoribosyltransferase family protein Machinery gene
  O1449_RS13775 (O1449_13790) - 2870234..2870629 (-) 396 WP_269238587.1 NUDIX domain-containing protein -
  O1449_RS13780 (O1449_13795) - 2870639..2871223 (-) 585 WP_050040921.1 TIGR00730 family Rossman fold protein -
  O1449_RS13785 (O1449_13800) - 2871396..2872409 (+) 1014 WP_046738987.1 CorA family divalent cation transporter -
  O1449_RS13790 (O1449_13805) - 2872452..2872739 (-) 288 WP_004660311.1 STAS domain-containing protein -
  O1449_RS13795 (O1449_13810) - 2872751..2873383 (-) 633 WP_269238588.1 ABC transporter substrate-binding protein -
  O1449_RS13800 (O1449_13815) - 2873403..2874080 (-) 678 WP_269238589.1 outer membrane lipid asymmetry maintenance protein MlaD -
  O1449_RS13805 (O1449_13820) mlaE 2874080..2874859 (-) 780 WP_269229506.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 26323.51 Da        Isoelectric Point: 8.6006

>NTDB_id=765308 O1449_RS13770 WP_269238586.1 2869597..2870283(+) (comF) [Acinetobacter sp. TR3]
MFKFISRSTRQLFDYLTPCSLCDIGIKRHFGVCQSCWEQLPWLKQSIERNQQQIFVACHYQYPIDRIIQQFKYEQKLHHQ
RLLEGLLQQLKLPKVHAIVPMPISTDRLVERGFNQTLLLAQALSKSLNVPIWQPVQRLAQHSQKGLSRIERLENIEQQFV
AAPPNHLRYRKVLIIDDVVTTGSSITALSHVLQQLGCQQIYSICLAAAVNHQASTLDFADTMESPHVE

Nucleotide


Download         Length: 687 bp        

>NTDB_id=765308 O1449_RS13770 WP_269238586.1 2869597..2870283(+) (comF) [Acinetobacter sp. TR3]
ATGTTTAAATTCATTAGCAGATCAACACGACAGCTTTTTGATTATCTAACCCCATGCAGCCTGTGTGATATTGGTATAAA
AAGGCACTTTGGCGTGTGTCAAAGTTGTTGGGAACAATTACCGTGGTTAAAACAATCCATCGAGCGTAACCAACAACAGA
TTTTTGTTGCCTGCCATTATCAATATCCGATTGATCGCATCATTCAGCAATTTAAATATGAACAAAAACTGCATCATCAA
CGACTATTGGAAGGACTGCTACAACAACTAAAGCTTCCTAAAGTTCATGCCATCGTTCCAATGCCGATTTCAACAGATCG
CTTGGTAGAACGAGGTTTCAATCAAACATTGCTACTCGCTCAAGCACTGAGTAAAAGCTTAAATGTACCCATCTGGCAAC
CCGTGCAACGCTTGGCGCAACATTCGCAAAAAGGTTTGTCACGCATAGAAAGACTAGAAAATATTGAACAGCAATTCGTG
GCTGCACCACCCAATCATCTTCGTTATCGAAAAGTCTTAATCATCGATGATGTTGTGACTACAGGGAGTTCGATCACTGC
TTTATCACACGTCTTACAACAACTTGGCTGCCAACAAATTTATAGTATCTGTTTAGCAGCTGCAGTAAATCATCAAGCTA
GTACACTAGATTTTGCTGACACCATGGAATCACCACATGTTGAGTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(155-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

67.788

91.228

0.618
  comF Acinetobacter baumannii D1279779

67.308

91.228

0.614