Detailed information    

insolico Bioinformatically predicted

Overview

Name   tsaP   Type   Machinery gene
Locus tag   O1449_RS00740 Genome accession   NZ_CP114264
Coordinates   146617..147768 (-) Length   383 a.a.
NCBI ID   WP_269238882.1    Uniprot ID   A0A9E9L4U1
Organism   Acinetobacter sp. TR3     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 141617..152768
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O1449_RS00715 (O1449_00715) - 141843..142388 (-) 546 WP_269238875.1 glutathione peroxidase -
  O1449_RS00720 (O1449_00720) - 142507..143280 (-) 774 WP_269238876.1 helix-turn-helix transcriptional regulator -
  O1449_RS00725 (O1449_00725) - 143559..144479 (+) 921 WP_269238877.1 DMT family transporter -
  O1449_RS00730 (O1449_00730) - 144871..145440 (-) 570 WP_269238878.1 Sua5/YciO/YrdC/YwlC family protein -
  O1449_RS00735 (O1449_00735) dprA 145473..146603 (-) 1131 WP_269238881.1 DNA-processing protein DprA Machinery gene
  O1449_RS00740 (O1449_00740) tsaP 146617..147768 (-) 1152 WP_269238882.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  O1449_RS00745 (O1449_00745) def 147889..148419 (+) 531 WP_269238883.1 peptide deformylase -
  O1449_RS00750 (O1449_00750) - 148443..148880 (+) 438 WP_269229092.1 DUF2946 family protein -
  O1449_RS00755 (O1449_00755) - 148954..151053 (+) 2100 WP_269238885.1 TonB-dependent copper receptor -
  O1449_RS00760 (O1449_00760) - 151101..151862 (-) 762 WP_269238887.1 hypothetical protein -

Sequence

Protein


Download         Length: 383 a.a.        Molecular weight: 41889.03 Da        Isoelectric Point: 9.6180

>NTDB_id=765280 O1449_RS00740 WP_269238882.1 146617..147768(-) (tsaP) [Acinetobacter sp. TR3]
MKKVLNGIPSFHALGLKKQLIAAAICAGLGMSINLTHAASPNANPPSVKAGAPHVYVVKKGDTLWDISGKFLSKPWRWPE
IWASNKHVKNPHWIYPSDRLLLCSLNGKPLIGKDEGDGCDGIIRRYSGSGSTLRPKVRIEALNNSVPVIPLAHIQQWLER
TSILPANAIANTPYVLGTADNRVLAGKGQNIYVRGQGIENGQRYGVYREGEPYIVLDEKGKKQNLGVELTQVASGVAITN
EKDITTFELTDSYNGEVRRGDRIMLEQDAMLPTLFYPTEPNQVKDGGKVIRVMGSLGTAAKNGVVTVDRGTTDGIEIGQV
FSAYQDGETVRDPKTKENVKLPGQYVGSIMIFKSFDRISYAYVLESELPIKLGSNIKPPRLDN

Nucleotide


Download         Length: 1152 bp        

>NTDB_id=765280 O1449_RS00740 WP_269238882.1 146617..147768(-) (tsaP) [Acinetobacter sp. TR3]
ATGAAAAAGGTTTTAAACGGCATACCATCATTTCATGCCTTGGGGTTAAAAAAACAACTGATTGCTGCTGCAATTTGTGC
AGGATTAGGCATGAGCATAAACCTTACTCATGCGGCAAGCCCTAATGCAAACCCACCATCCGTAAAAGCGGGTGCACCAC
ATGTCTATGTGGTGAAAAAAGGGGATACGCTTTGGGATATTTCAGGCAAATTTTTAAGCAAGCCTTGGCGCTGGCCTGAA
ATTTGGGCAAGCAATAAACATGTCAAGAATCCACATTGGATTTATCCTAGTGATCGCTTACTACTTTGTAGTTTGAACGG
TAAGCCACTCATTGGTAAAGATGAAGGCGATGGTTGTGATGGTATCATTCGCCGTTACTCTGGCAGTGGATCTACTTTAC
GTCCAAAAGTTCGTATTGAGGCGCTCAATAATAGTGTTCCTGTAATTCCACTGGCACATATTCAACAATGGTTAGAACGT
ACCTCTATTCTTCCAGCGAATGCGATTGCAAATACCCCATATGTATTGGGTACAGCAGATAATCGTGTGTTGGCTGGTAA
AGGTCAGAACATTTATGTTCGTGGTCAAGGTATCGAAAATGGTCAACGTTATGGCGTATACCGTGAAGGCGAACCGTATA
TCGTGCTTGATGAAAAAGGGAAGAAACAGAATCTAGGTGTTGAGCTCACGCAAGTCGCTTCTGGTGTTGCGATTACCAAT
GAAAAAGACATTACCACCTTTGAATTAACTGATAGTTATAATGGTGAAGTACGTCGTGGCGACCGCATCATGCTTGAACA
AGATGCGATGTTACCTACTTTATTCTATCCAACTGAACCAAATCAGGTGAAAGATGGTGGTAAAGTCATCCGCGTGATGG
GATCTCTGGGTACAGCAGCAAAAAATGGTGTTGTCACCGTTGATCGTGGTACAACGGATGGGATTGAAATCGGACAAGTC
TTTAGTGCTTACCAAGATGGCGAAACTGTACGTGATCCAAAAACCAAAGAAAATGTGAAATTACCAGGGCAATATGTTGG
TAGCATCATGATCTTCAAGAGTTTTGACCGCATCAGTTACGCTTATGTATTAGAGAGCGAATTACCAATTAAACTTGGTT
CAAATATCAAGCCACCTCGTCTTGATAACTAA

Domains

Predicted by InterproScan.

LysM domain (LysM)

(56-100)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tsaP Acinetobacter baumannii D1279779

70.312

100

0.705