Detailed information    

insolico Bioinformatically predicted

Overview

Name   tsaP   Type   Machinery gene
Locus tag   O1450_RS15260 Genome accession   NZ_CP114256
Coordinates   3152266..3153417 (+) Length   383 a.a.
NCBI ID   WP_269229094.1    Uniprot ID   -
Organism   Acinetobacter sp. TR11     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3147266..3158417
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O1450_RS15240 (O1450_15240) - 3148161..3148922 (+) 762 WP_087544549.1 hypothetical protein -
  O1450_RS15245 (O1450_15245) - 3148969..3151080 (-) 2112 WP_269229091.1 TonB-dependent copper receptor -
  O1450_RS15250 (O1450_15250) - 3151154..3151591 (-) 438 WP_269229092.1 DUF2946 family protein -
  O1450_RS15255 (O1450_15255) def 3151615..3152145 (-) 531 WP_269229093.1 peptide deformylase -
  O1450_RS15260 (O1450_15260) tsaP 3152266..3153417 (+) 1152 WP_269229094.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  O1450_RS15265 (O1450_15265) dprA 3153431..3154561 (+) 1131 WP_269229095.1 DNA-processing protein DprA Machinery gene
  O1450_RS15270 (O1450_15270) - 3154594..3155163 (+) 570 WP_269229096.1 Sua5/YciO/YrdC/YwlC family protein -
  O1450_RS15275 (O1450_15275) - 3155555..3156475 (-) 921 WP_269229097.1 DMT family transporter -
  O1450_RS15280 (O1450_15280) - 3156754..3157527 (+) 774 WP_269229098.1 helix-turn-helix transcriptional regulator -
  O1450_RS15285 (O1450_15285) - 3157646..3158191 (+) 546 WP_269229099.1 glutathione peroxidase -

Sequence

Protein


Download         Length: 383 a.a.        Molecular weight: 41933.04 Da        Isoelectric Point: 9.5138

>NTDB_id=765272 O1450_RS15260 WP_269229094.1 3152266..3153417(+) (tsaP) [Acinetobacter sp. TR11]
MKKVLNGIPSFHALGLKKQLIAAAICAGLGMSINLTHAASPNANPPSVKAGAPHVYVVKKGDTLWDISGKFLSKPWRWPE
IWASNKHVKNPHWIYPDDRLLLCSLNGKPLIGKDEGDGCDGIIRRYSGSGSTLRPKVRIEALNNSVPVIPLAHIQQWLER
TSILPANSIANTPYVLGTADNRVLAGKGQNIYVRGQGIENGQRYGVYREGEPYIVLDEKGKKQNLGVELTQVASGVAITN
EKDITTFELTDSYNGEVRRGDRIMLEQDAMLPTLFYPTEPNQVKDGGKVIRVMGSLGTAAKNGVVTVDRGTTDGIEIGQV
FSAYQDGETVRDPKTKENVKLPGQYVGSIMIFKSFDRISYAYVLESELPIKLGSNIKPPRLDN

Nucleotide


Download         Length: 1152 bp        

>NTDB_id=765272 O1450_RS15260 WP_269229094.1 3152266..3153417(+) (tsaP) [Acinetobacter sp. TR11]
ATGAAAAAGGTTTTAAACGGCATACCATCATTTCATGCCTTGGGGTTAAAAAAACAACTGATTGCTGCTGCAATTTGTGC
AGGATTAGGCATGAGCATAAACCTTACTCATGCGGCAAGCCCTAATGCAAACCCACCATCCGTAAAAGCGGGTGCACCAC
ATGTCTATGTGGTGAAAAAAGGGGATACGCTTTGGGATATTTCAGGCAAATTTTTAAGCAAGCCTTGGCGCTGGCCTGAA
ATTTGGGCAAGCAATAAACATGTCAAGAATCCACATTGGATTTATCCTGATGATCGCTTACTACTTTGTAGTTTGAACGG
TAAGCCACTCATTGGTAAAGATGAAGGCGATGGTTGTGATGGTATCATTCGCCGTTACTCTGGCAGTGGATCTACTTTAC
GTCCAAAAGTTCGTATTGAGGCGCTCAATAATAGTGTTCCTGTAATTCCACTGGCACATATTCAACAATGGTTAGAACGT
ACCTCTATTCTTCCAGCGAATTCGATTGCAAATACCCCATATGTATTGGGTACAGCAGATAATCGTGTGTTGGCTGGTAA
AGGTCAGAACATTTATGTTCGTGGTCAAGGTATCGAAAATGGTCAACGTTATGGCGTATACCGTGAAGGCGAACCGTATA
TCGTGCTTGATGAAAAAGGGAAGAAACAGAATCTAGGTGTTGAGCTCACGCAAGTCGCTTCTGGTGTTGCGATTACCAAT
GAAAAAGACATTACTACCTTTGAATTAACTGATAGTTATAATGGTGAAGTACGTCGTGGCGACCGCATCATGCTTGAACA
AGATGCGATGTTACCTACTTTATTCTATCCAACTGAACCAAATCAGGTGAAAGATGGTGGTAAAGTCATCCGCGTGATGG
GATCTCTGGGTACAGCAGCAAAAAATGGTGTTGTCACCGTTGATCGTGGTACAACGGATGGGATTGAAATCGGACAAGTC
TTTAGTGCTTACCAAGATGGCGAAACTGTACGTGATCCAAAAACCAAAGAAAATGTGAAATTACCAGGGCAATATGTTGG
TAGCATCATGATCTTCAAGAGTTTTGACCGCATCAGTTACGCTTATGTATTAGAGAGCGAATTACCAATTAAACTTGGTT
CAAATATCAAGCCGCCTCGTCTTGATAACTAA

Domains

Predicted by InterproScan.

LysM domain (LysM)

(56-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tsaP Acinetobacter baumannii D1279779

70.573

100

0.708