Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   O1450_RS01590 Genome accession   NZ_CP114256
Coordinates   352227..352742 (+) Length   171 a.a.
NCBI ID   WP_269229463.1    Uniprot ID   A0A9E9L3U0
Organism   Acinetobacter sp. TR11     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 347227..357742
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O1450_RS01580 (O1450_01580) - 347450..348199 (+) 750 WP_269229461.1 PilX N-terminal domain-containing pilus assembly protein -
  O1450_RS01585 (O1450_01585) - 348213..352214 (+) 4002 WP_269229462.1 hypothetical protein -
  O1450_RS01590 (O1450_01590) comE 352227..352742 (+) 516 WP_269229463.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  O1450_RS01595 (O1450_01595) pilE 352736..353176 (+) 441 WP_269229464.1 type IV pilin protein Machinery gene
  O1450_RS01600 (O1450_01600) rpsP 353434..353691 (+) 258 WP_004660208.1 30S ribosomal protein S16 -
  O1450_RS01605 (O1450_01605) rimM 353708..354256 (+) 549 WP_005156501.1 ribosome maturation factor RimM -
  O1450_RS01610 (O1450_01610) trmD 354302..355042 (+) 741 WP_269229465.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  O1450_RS01615 (O1450_01615) rplS 355239..355610 (+) 372 WP_004660214.1 50S ribosomal protein L19 -
  O1450_RS01620 (O1450_01620) - 355669..356643 (-) 975 WP_269229466.1 triacylglycerol lipase -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18934.53 Da        Isoelectric Point: 8.9209

>NTDB_id=765242 O1450_RS01590 WP_269229463.1 352227..352742(+) (comE) [Acinetobacter sp. TR11]
MQTSQQGFTLIELMVVLVIITIFAVIAIPSYQVYSRRAVASTAQQEIQRLADQLERHKGKNFSYLGFDASYMYKNTTGNL
VGYDPVTSQLVLPVGATGTDIRYKLSIRDGTDTTKLLTDVTALGQRWVIRAESTDPQNFSYLMTNTGTQCRNKTAANVTF
TSCGVGGENKW

Nucleotide


Download         Length: 516 bp        

>NTDB_id=765242 O1450_RS01590 WP_269229463.1 352227..352742(+) (comE) [Acinetobacter sp. TR11]
ATGCAAACATCCCAGCAAGGTTTTACATTGATTGAGTTAATGGTAGTTTTGGTAATTATTACTATTTTTGCCGTCATTGC
TATTCCAAGCTATCAAGTGTATTCACGTCGAGCTGTTGCAAGTACGGCACAACAAGAAATACAACGTTTAGCTGATCAAT
TGGAACGCCATAAAGGTAAAAACTTTAGTTACTTAGGCTTTGATGCAAGTTATATGTATAAGAACACAACTGGTAATCTG
GTGGGGTATGACCCAGTAACATCTCAACTAGTTTTGCCTGTTGGTGCCACTGGAACTGATATTCGTTATAAGTTATCTAT
TAGGGATGGTACTGATACTACAAAATTATTGACTGATGTAACGGCGTTAGGGCAACGATGGGTGATTCGGGCTGAAAGCA
CAGATCCGCAGAACTTTAGTTATTTAATGACTAATACTGGGACACAATGTAGAAATAAAACAGCTGCTAATGTCACTTTT
ACTAGCTGTGGTGTGGGTGGGGAAAATAAATGGTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(4-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Acinetobacter baylyi ADP1

53.254

98.83

0.526
  pilY2 Acinetobacter baumannii D1279779

47.799

92.982

0.444