Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   O1N17_RS03060 Genome accession   NZ_CP114183
Coordinates   625244..625858 (-) Length   204 a.a.
NCBI ID   WP_149150285.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain PH1339     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 620244..630858
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O1N17_RS03050 (O1N17_03040) aceF 621534..623420 (+) 1887 WP_031855537.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -
  O1N17_RS03055 (O1N17_03045) lpdA 623689..625116 (+) 1428 WP_005479684.1 dihydrolipoyl dehydrogenase -
  O1N17_RS03060 (O1N17_03050) opaR 625244..625858 (-) 615 WP_149150285.1 transcriptional regulator OpaR Regulator
  O1N17_RS03065 (O1N17_03055) hpt 626177..626707 (+) 531 WP_005479701.1 hypoxanthine phosphoribosyltransferase -
  O1N17_RS03070 (O1N17_03060) can 626782..627450 (-) 669 WP_005462578.1 carbonate dehydratase -
  O1N17_RS03075 (O1N17_03065) - 627734..629404 (+) 1671 WP_021450011.1 SulP family inorganic anion transporter -
  O1N17_RS03080 (O1N17_03070) - 629657..630574 (+) 918 WP_005462584.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23635.92 Da        Isoelectric Point: 5.8327

>NTDB_id=764877 O1N17_RS03060 WP_149150285.1 625244..625858(-) (opaR) [Vibrio parahaemolyticus strain PH1339]
MDSIAKRPRTRLSPLKRKQQLMEIALEVFARRGIGRGGHADIAEIAQVSVATVFDYFPTREDLVDEVLNHVVRQFSNFLS
DNIDLDIHARENIANITNAMIELVSQDCHWLKVWFEWSASTRDEVWPLFVSTNRTNQLLVQNMFIKAIERGEVCDQHDSE
HLANLFHGICYSLFVQANRFKGEAELKELVSAYLDMLCIYNREH

Nucleotide


Download         Length: 615 bp        

>NTDB_id=764877 O1N17_RS03060 WP_149150285.1 625244..625858(-) (opaR) [Vibrio parahaemolyticus strain PH1339]
ATGGACTCAATTGCAAAGAGACCTAGAACTAGGCTTTCTCCTCTTAAACGTAAGCAACAACTCATGGAAATCGCGTTAGA
AGTATTTGCACGCCGTGGTATTGGCCGTGGTGGTCACGCAGATATTGCTGAAATTGCGCAAGTGTCTGTTGCAACCGTTT
TTGACTACTTCCCAACTCGCGAAGATTTGGTTGATGAAGTTCTCAACCATGTTGTCCGTCAGTTCTCGAATTTCCTTTCG
GACAATATCGACCTAGACATACACGCTCGAGAAAACATCGCAAACATCACCAATGCGATGATCGAGCTTGTAAGCCAAGA
TTGTCACTGGCTGAAAGTTTGGTTCGAGTGGAGCGCATCAACTCGTGATGAAGTTTGGCCTCTATTTGTGTCTACCAACC
GCACTAACCAATTACTGGTTCAAAACATGTTCATTAAAGCGATTGAACGCGGTGAAGTGTGTGATCAACACGATTCAGAA
CACTTGGCAAATCTATTCCACGGTATTTGTTACTCGCTGTTCGTACAAGCAAACCGCTTCAAAGGTGAAGCCGAGTTGAA
GGAACTCGTGAGCGCTTACCTAGATATGCTTTGCATCTACAATCGCGAACACTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(22-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

99.51

100

0.995
  hapR Vibrio cholerae C6706

71.717

97.059

0.696
  hapR Vibrio cholerae strain A1552

71.717

97.059

0.696