Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   M1L51_RS16955 Genome accession   NZ_CP114180
Coordinates   3486732..3487421 (-) Length   229 a.a.
NCBI ID   WP_199910801.1    Uniprot ID   -
Organism   Bacillus velezensis strain DMW1     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3481732..3492421
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M1L51_RS16920 fliW 3481823..3482254 (-) 432 WP_007407475.1 flagellar assembly protein FliW -
  M1L51_RS16925 - 3482284..3482853 (-) 570 WP_007407476.1 DUF6470 family protein -
  M1L51_RS16930 flgL 3482944..3483861 (-) 918 WP_007407477.1 flagellar hook-associated protein FlgL -
  M1L51_RS16935 flgK 3483873..3485390 (-) 1518 WP_007407478.1 flagellar hook-associated protein FlgK -
  M1L51_RS16940 - 3485406..3485888 (-) 483 WP_053574009.1 flagellar protein FlgN -
  M1L51_RS16945 flgM 3485903..3486169 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  M1L51_RS16950 - 3486239..3486658 (-) 420 WP_012118571.1 TIGR03826 family flagellar region protein -
  M1L51_RS16955 comFC 3486732..3487421 (-) 690 WP_199910801.1 phosphoribosyltransferase family protein Machinery gene
  M1L51_RS16960 - 3487427..3487711 (-) 285 WP_003151389.1 late competence development ComFB family protein -
  M1L51_RS16965 comFA 3487769..3489154 (-) 1386 WP_053574011.1 DEAD/DEAH box helicase Machinery gene
  M1L51_RS16970 - 3489262..3490110 (-) 849 WP_053574012.1 DegV family protein -
  M1L51_RS16975 degU 3490208..3490897 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  M1L51_RS16980 degS 3490974..3492137 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25143.74 Da        Isoelectric Point: 8.2927

>NTDB_id=764812 M1L51_RS16955 WP_199910801.1 3486732..3487421(-) (comFC) [Bacillus velezensis strain DMW1]
MNCLLCDSPISSSLTWRSLFSLAPEQEVCSICSSQFEKIEGPVCSICGRPQESNEKCADCAARESKTEKRFLLRQNRSVY
LYNDAMKDSLARFKFRGDAKIIQAFGRDFAAGFKAAYPSNTHTLIPIPLSGERLAERGFNQSELLASLLGMPVISPLIRL
NNEKQSKKSKTDRLSAEKKFSAAENSAEGMNVILIDDIYTTGATLHQAAEVLLTAGKASSVSSFTLIRS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=764812 M1L51_RS16955 WP_199910801.1 3486732..3487421(-) (comFC) [Bacillus velezensis strain DMW1]
CTGAATTGTTTATTGTGTGACTCACCAATTTCAAGTTCATTGACTTGGAGATCTCTGTTTTCTCTGGCGCCCGAGCAAGA
GGTATGCAGCATATGCAGCAGCCAATTCGAAAAAATTGAAGGCCCCGTATGCAGTATATGCGGGAGGCCTCAGGAGTCTA
ATGAAAAATGCGCTGATTGTGCGGCCCGGGAATCAAAAACGGAAAAGCGCTTTTTGCTGCGGCAAAACCGTTCGGTATAT
TTATATAATGATGCGATGAAGGACTCATTGGCCCGTTTTAAATTCAGGGGTGATGCGAAAATCATTCAAGCATTTGGACG
TGACTTTGCTGCCGGCTTTAAAGCGGCATATCCATCAAATACACATACTCTCATCCCTATTCCGCTGAGCGGCGAACGGC
TGGCGGAACGCGGATTCAATCAATCCGAGCTGCTGGCCTCTCTGCTCGGAATGCCCGTCATTTCCCCCCTCATCCGACTG
AACAACGAAAAACAATCCAAAAAGAGCAAAACAGACAGGCTGTCTGCAGAAAAAAAGTTTTCAGCAGCCGAAAACTCCGC
CGAAGGTATGAACGTCATTTTAATAGATGATATTTATACGACGGGCGCCACACTTCACCAAGCCGCCGAAGTCCTGCTGA
CAGCGGGCAAAGCGTCATCGGTCTCCTCTTTTACTTTAATCAGGAGCTAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(2-61)

Phosphoribosyl transferase domain (Pribosyltran)

(167-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

60.352

99.127

0.598