Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   O0R52_RS18395 Genome accession   NZ_CP114066
Coordinates   3604341..3605030 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus halotolerans strain B13     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3599341..3610030
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O0R52_RS18360 (O0R52_18360) flgN 3599522..3600004 (-) 483 WP_010332064.1 flagellar protein FlgN -
  O0R52_RS18365 (O0R52_18365) flgM 3600019..3600285 (-) 267 WP_044159458.1 flagellar biosynthesis anti-sigma factor FlgM -
  O0R52_RS18370 (O0R52_18370) - 3600365..3600784 (-) 420 WP_217827494.1 TIGR03826 family flagellar region protein -
  O0R52_RS18375 (O0R52_18375) comFC 3600858..3601580 (-) 723 WP_217827493.1 phosphoribosyltransferase family protein Machinery gene
  O0R52_RS18380 (O0R52_18380) - 3601544..3601840 (-) 297 WP_044159464.1 late competence development ComFB family protein -
  O0R52_RS18385 (O0R52_18385) comFA 3601897..3603291 (-) 1395 WP_217827492.1 ATP-dependent helicase ComFA Machinery gene
  O0R52_RS18390 (O0R52_18390) - 3603399..3604244 (-) 846 WP_044159470.1 DegV family protein -
  O0R52_RS18395 (O0R52_18395) degU 3604341..3605030 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  O0R52_RS18400 (O0R52_18400) degS 3605113..3606270 (-) 1158 WP_044159475.1 two-component sensor histidine kinase DegS Regulator
  O0R52_RS18405 (O0R52_18405) - 3606487..3607140 (+) 654 WP_044159478.1 YigZ family protein -
  O0R52_RS18410 (O0R52_18410) - 3607140..3608312 (+) 1173 WP_269107455.1 LCP family protein -
  O0R52_RS18415 (O0R52_18415) - 3608387..3609463 (-) 1077 WP_044159481.1 glycosyltransferase family 4 protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=764417 O0R52_RS18395 WP_003219701.1 3604341..3605030(-) (degU) [Bacillus halotolerans strain B13]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=764417 O0R52_RS18395 WP_003219701.1 3604341..3605030(-) (degU) [Bacillus halotolerans strain B13]
GTGACTAAAGTAAACATTGTTATTATCGACGACCATCAGTTATTTCGTGAAGGTGTTAAGCGGATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCGGAAGGAGACGACGGAGATGAAGCGGCTCGTATCGTTGAGCACTATCATCCTGATGTCGTGA
TCATGGATATCAATATGCCGAACGTAAATGGCGTGGAAGCTACAAAGCAGCTTGTAGAGCTGTATCCTGAATCTAAAGTA
ATTATTCTATCAATTCACGATGACGAGAATTATGTAACACATGCCCTGAAAACAGGTGCAAGAGGTTATCTGCTGAAAGA
GATGGATGCTGATACACTAATTGAAGCGGTTAAAGTAGTTGCCGAGGGCGGTTCTTACCTTCACCCGAAGGTTACTCACA
ACCTCGTAAACGAATTCCGACGTCTTGCAACAAGCGGAGTTTCTGCTCATCCTCAGCATGAGGTCTATCCAGAGATTCGC
AGACCATTACATATTTTAACAAGACGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGAAAAAGCAACCGCGGCATCGG
TGAATCATTGTTTATCAGTGAAAAAACTGTTAAAAACCATGTCAGCAATATCTTACAAAAAATGAATGTAAACGACCGGA
CGCAAGCCGTGGTGGTCGCCATTAAAAATGGTTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1