Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   O0R52_RS18385 Genome accession   NZ_CP114066
Coordinates   3601897..3603291 (-) Length   464 a.a.
NCBI ID   WP_217827492.1    Uniprot ID   -
Organism   Bacillus halotolerans strain B13     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3596897..3608291
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O0R52_RS18350 (O0R52_18350) flgL 3597074..3597970 (-) 897 WP_059292439.1 flagellar hook-associated protein FlgL -
  O0R52_RS18355 (O0R52_18355) flgK 3597980..3599503 (-) 1524 WP_217827495.1 flagellar hook-associated protein FlgK -
  O0R52_RS18360 (O0R52_18360) flgN 3599522..3600004 (-) 483 WP_010332064.1 flagellar protein FlgN -
  O0R52_RS18365 (O0R52_18365) flgM 3600019..3600285 (-) 267 WP_044159458.1 flagellar biosynthesis anti-sigma factor FlgM -
  O0R52_RS18370 (O0R52_18370) - 3600365..3600784 (-) 420 WP_217827494.1 TIGR03826 family flagellar region protein -
  O0R52_RS18375 (O0R52_18375) comFC 3600858..3601580 (-) 723 WP_217827493.1 phosphoribosyltransferase family protein Machinery gene
  O0R52_RS18380 (O0R52_18380) - 3601544..3601840 (-) 297 WP_044159464.1 late competence development ComFB family protein -
  O0R52_RS18385 (O0R52_18385) comFA 3601897..3603291 (-) 1395 WP_217827492.1 ATP-dependent helicase ComFA Machinery gene
  O0R52_RS18390 (O0R52_18390) - 3603399..3604244 (-) 846 WP_044159470.1 DegV family protein -
  O0R52_RS18395 (O0R52_18395) degU 3604341..3605030 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  O0R52_RS18400 (O0R52_18400) degS 3605113..3606270 (-) 1158 WP_044159475.1 two-component sensor histidine kinase DegS Regulator
  O0R52_RS18405 (O0R52_18405) - 3606487..3607140 (+) 654 WP_044159478.1 YigZ family protein -

Sequence

Protein


Download         Length: 464 a.a.        Molecular weight: 52771.80 Da        Isoelectric Point: 9.6072

>NTDB_id=764416 O0R52_RS18385 WP_217827492.1 3601897..3603291(-) (comFA) [Bacillus halotolerans strain B13]
MQTKTSESNSLFSKELQQQLQGRHLLRTEIPFSDEIIDWHIEHGYISAEGSISKNKWGYRCNRCGQNDQHYFSSYHSSGE
DKVYCRSCVMMGRVSEDVSLYSWCKEAEANWKPIKLTWDGKLSSGQQKAADVLIEALSKQEELLIWAVCGAGKTELLFPG
IELALNLRLRVCIATPRTDVVLELAPRLNAAFQGADISALYGGSDDKGRLSPLMISTTHQLLRYKDAFDVMIIDEVDAFP
YSADHTLQFAVQKARKKNSTLVFLSATPPKELKRKTYKGELKSVRIPARYHRKPLPEPRFQWCGNWKKKLTRNKIPNAVK
RWIEQHVKEGRPVFLFVPSISVLEKAASCFKDMNYRTAAVHAEDKLRKEKVQQFRDGQFDLLITTTILERGVTVPMVQAG
ILGAESPIFTESALVQIAGRTGRHKEHADGDVIYFHFGKTKSMIEARKHIKIMNELALKNKLID

Nucleotide


Download         Length: 1395 bp        

>NTDB_id=764416 O0R52_RS18385 WP_217827492.1 3601897..3603291(-) (comFA) [Bacillus halotolerans strain B13]
ATGCAGACTAAGACATCAGAATCGAACAGCCTATTCTCTAAAGAACTGCAGCAGCAGCTTCAGGGCCGTCATCTGCTTAG
AACAGAAATCCCATTTTCTGACGAGATCATTGATTGGCATATCGAGCATGGTTATATATCTGCCGAGGGGTCTATATCAA
AAAATAAATGGGGATATAGATGCAATAGATGCGGTCAAAATGATCAACATTATTTTTCTTCGTATCATTCATCAGGAGAA
GATAAAGTATACTGCCGCTCTTGTGTCATGATGGGCAGAGTGAGTGAGGATGTTTCTTTATATTCGTGGTGCAAGGAGGC
AGAGGCAAACTGGAAGCCTATAAAACTGACTTGGGATGGAAAGCTTTCAAGCGGACAGCAAAAGGCCGCTGATGTCTTAA
TTGAAGCACTTTCGAAGCAAGAAGAGCTCCTTATTTGGGCTGTTTGCGGCGCAGGTAAAACTGAATTATTATTCCCGGGT
ATAGAATTGGCATTAAATTTAAGACTGCGTGTTTGTATTGCAACCCCGCGCACCGATGTTGTATTAGAGCTTGCTCCGAG
ACTGAATGCTGCATTTCAGGGTGCTGATATTTCAGCTCTATACGGAGGAAGTGATGACAAAGGGCGTTTATCTCCGCTTA
TGATTTCCACAACCCATCAGCTTTTGCGCTATAAAGACGCATTCGACGTCATGATCATTGATGAAGTGGATGCTTTTCCA
TATTCCGCTGATCATACTCTTCAATTCGCTGTTCAAAAAGCGAGAAAGAAAAACAGCACTCTTGTTTTTCTAAGCGCAAC
ACCTCCTAAAGAATTAAAAAGAAAAACATATAAAGGTGAGTTAAAATCCGTTCGCATACCGGCCAGATACCATCGGAAAC
CATTGCCAGAACCGCGTTTTCAGTGGTGCGGAAACTGGAAAAAGAAATTAACCCGAAACAAAATCCCAAATGCGGTAAAA
AGATGGATAGAACAGCATGTGAAAGAAGGAAGGCCCGTTTTTTTATTTGTTCCTTCCATTTCTGTTTTGGAAAAGGCTGC
TTCTTGTTTTAAAGATATGAATTATCGAACAGCGGCTGTACATGCGGAAGATAAGCTCAGAAAAGAAAAAGTGCAGCAAT
TTCGAGACGGTCAGTTTGATCTGTTAATCACAACAACAATATTGGAAAGAGGTGTCACAGTTCCTATGGTCCAAGCAGGC
ATCTTAGGGGCAGAATCGCCCATCTTTACGGAAAGCGCGCTTGTGCAAATCGCGGGAAGGACAGGACGGCATAAAGAACA
TGCAGACGGCGATGTCATTTATTTTCACTTCGGAAAAACAAAGAGTATGATAGAGGCAAGAAAGCATATAAAAATAATGA
ATGAATTGGCTCTAAAAAATAAATTGATAGACTAG

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(323-424)

Type III restriction enzyme, res subunit (ResIII)

(121-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

84.061

98.707

0.83