Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   O0R52_RS16430 Genome accession   NZ_CP114066
Coordinates   3207606..3208250 (-) Length   214 a.a.
NCBI ID   WP_269107368.1    Uniprot ID   -
Organism   Bacillus halotolerans strain B13     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3202606..3213250
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O0R52_RS16395 (O0R52_16395) - 3203799..3204230 (+) 432 WP_024122673.1 Na(+)/H(+) antiporter subunit B -
  O0R52_RS16400 (O0R52_16400) - 3204230..3204571 (+) 342 WP_044158938.1 Na(+)/H(+) antiporter subunit C -
  O0R52_RS16405 (O0R52_16405) - 3204564..3206045 (+) 1482 WP_269107367.1 Na+/H+ antiporter subunit D -
  O0R52_RS16410 (O0R52_16410) - 3206051..3206527 (+) 477 WP_044158941.1 Na+/H+ antiporter subunit E -
  O0R52_RS16415 (O0R52_16415) - 3206527..3206811 (+) 285 WP_024122677.1 Na(+)/H(+) antiporter subunit F1 -
  O0R52_RS16420 (O0R52_16420) mnhG 3206795..3207169 (+) 375 WP_059292644.1 monovalent cation/H(+) antiporter subunit G -
  O0R52_RS16425 (O0R52_16425) - 3207208..3207588 (-) 381 WP_044158943.1 hotdog fold thioesterase -
  O0R52_RS16430 (O0R52_16430) comA 3207606..3208250 (-) 645 WP_269107368.1 two-component system response regulator ComA Regulator
  O0R52_RS16435 (O0R52_16435) comP 3208331..3210634 (-) 2304 WP_269107369.1 histidine kinase Regulator
  O0R52_RS16440 (O0R52_16440) comX 3210648..3210821 (-) 174 WP_127696529.1 competence pheromone ComX -
  O0R52_RS16445 (O0R52_16445) - 3210790..3211647 (-) 858 WP_164848141.1 polyprenyl synthetase family protein -
  O0R52_RS16450 (O0R52_16450) degQ 3211855..3211995 (-) 141 WP_024122683.1 degradation enzyme regulation protein DegQ Regulator
  O0R52_RS16455 (O0R52_16455) - 3212456..3212824 (+) 369 WP_044158947.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24139.45 Da        Isoelectric Point: 4.6730

>NTDB_id=764410 O0R52_RS16430 WP_269107368.1 3207606..3208250(-) (comA) [Bacillus halotolerans strain B13]
MKKILVIDDHPAVMEGTKTILETDSNLSVDCLSPEPSEQFIHQHDFSSYDLILMDLNLGGDVNGMELSKQILQENPHCKI
IVYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNGDILVDFAYFKQLMTQQKTKPAPSSQKEQDVLTPRECL
ILQEVEKGFTNQEITDALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=764410 O0R52_RS16430 WP_269107368.1 3207606..3208250(-) (comA) [Bacillus halotolerans strain B13]
ATGAAAAAGATACTAGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAATTTTGGAAACGGATTCGAATTT
GTCTGTTGATTGTCTCAGTCCTGAACCCAGTGAACAGTTCATACACCAGCATGATTTCTCATCATATGATCTCATCTTAA
TGGATTTGAACTTAGGCGGCGATGTCAATGGGATGGAGCTTTCTAAACAGATTTTACAAGAGAATCCTCATTGTAAAATT
ATCGTATATACCGGTTATGAGGTCGAGGATTATTTTGAGGAAGCGATTCGTGCGGGTCTGCACGGCGCCATCAGCAAAAC
CGAATCAAAGGAAAAGATCACCCAATACATATATCACGTGCTCAACGGAGACATTTTAGTCGATTTCGCTTACTTTAAAC
AGCTGATGACTCAGCAAAAAACAAAGCCGGCCCCTTCCTCTCAAAAAGAACAAGATGTGCTCACACCAAGAGAATGCCTG
ATTCTTCAAGAAGTTGAAAAAGGTTTTACCAACCAAGAAATTACAGATGCGCTTCATTTAAGCAAGCGGTCCATTGAATA
CAGCCTGACGTCGATTTTCAACAAGCTTAATGTCGGTTCCAGGACGGAAGCGGTGTTGATTGCAAAATCAGACGGTGTGC
TTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

98.131

100

0.981