Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   O0R52_RS01970 Genome accession   NZ_CP114066
Coordinates   368949..369386 (-) Length   145 a.a.
NCBI ID   WP_044161928.1    Uniprot ID   -
Organism   Bacillus halotolerans strain B13     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 363949..374386
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O0R52_RS01940 (O0R52_01940) - 364081..365217 (+) 1137 WP_269107766.1 zinc-dependent alcohol dehydrogenase -
  O0R52_RS01945 (O0R52_01945) - 365230..365685 (+) 456 WP_059291986.1 RDD family protein -
  O0R52_RS01950 (O0R52_01950) - 365797..366102 (+) 306 WP_414017626.1 YckD family protein -
  O0R52_RS01955 (O0R52_01955) - 366254..366982 (+) 729 WP_269107768.1 AAA family ATPase -
  O0R52_RS01960 (O0R52_01960) - 367055..368488 (+) 1434 WP_044161931.1 glycoside hydrolase family 1 protein -
  O0R52_RS01965 (O0R52_01965) nin/comJ 368524..368922 (-) 399 WP_024120177.1 competence protein ComJ Regulator
  O0R52_RS01970 (O0R52_01970) nucA/comI 368949..369386 (-) 438 WP_044161928.1 DNA-entry nuclease Machinery gene
  O0R52_RS01975 (O0R52_01975) tlpC 369571..371295 (-) 1725 WP_044161927.1 methyl-accepting chemotaxis protein TlpC -
  O0R52_RS01980 (O0R52_01980) hxlB 371404..371961 (-) 558 WP_256766631.1 6-phospho-3-hexuloisomerase -
  O0R52_RS01985 (O0R52_01985) hxlA 371967..372599 (-) 633 WP_003224929.1 3-hexulose-6-phosphate synthase -
  O0R52_RS01990 (O0R52_01990) hxlR 372831..373193 (+) 363 WP_044161922.1 transcriptional activator HxlR -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 15972.70 Da        Isoelectric Point: 4.2415

>NTDB_id=764355 O0R52_RS01970 WP_044161928.1 368949..369386(-) (nucA/comI) [Bacillus halotolerans strain B13]
MDIIKTLLLVIVVIAAAAVGLIKGDFFSDDQKTSQTEEYDETLAFPSERYPETANHIKDAISEGHSNVCTIDRDGAEERR
EQSLKDVPSKTGYDRDEWPMAMCKEGGEGASVEYISPADNRGAGSWVGHQLTDYPDGTKVLFTIQ

Nucleotide


Download         Length: 438 bp        

>NTDB_id=764355 O0R52_RS01970 WP_044161928.1 368949..369386(-) (nucA/comI) [Bacillus halotolerans strain B13]
ATGGACATTATAAAAACTTTACTTCTCGTAATAGTCGTCATAGCAGCTGCAGCTGTTGGCCTGATTAAGGGAGACTTTTT
CTCAGACGATCAAAAAACGTCTCAAACAGAAGAATATGACGAAACACTGGCCTTCCCTTCTGAGCGTTATCCTGAGACAG
CAAATCATATCAAGGACGCAATAAGTGAGGGGCATTCAAATGTGTGCACCATAGACAGAGACGGAGCTGAGGAACGCCGC
GAACAATCATTAAAAGACGTACCTTCCAAAACAGGGTATGACCGAGATGAATGGCCAATGGCCATGTGCAAAGAAGGCGG
TGAAGGGGCTTCTGTAGAATATATTTCTCCCGCTGACAATCGCGGCGCAGGCTCCTGGGTCGGGCATCAGCTGACCGATT
ACCCTGACGGCACAAAGGTTTTATTTACGATTCAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(48-144)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

92.361

99.31

0.917