Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   OZ415_RS00040 Genome accession   NZ_CP114063
Coordinates   9661..10209 (+) Length   182 a.a.
NCBI ID   WP_026465541.1    Uniprot ID   A0A9W7S2J3
Organism   Aerococcus urinaeequi strain 2020-HN-1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4661..15209
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OZ415_RS00030 (OZ415_00030) gyrA 6580..9159 (+) 2580 WP_269104987.1 DNA gyrase subunit A -
  OZ415_RS00035 (OZ415_00035) rpsF 9322..9624 (+) 303 WP_003142910.1 30S ribosomal protein S6 -
  OZ415_RS00040 (OZ415_00040) ssb 9661..10209 (+) 549 WP_026465541.1 single-stranded DNA-binding protein Machinery gene
  OZ415_RS00045 (OZ415_00045) rpsR 10236..10472 (+) 237 WP_003142905.1 30S ribosomal protein S18 -
  OZ415_RS00050 (OZ415_00050) - 10534..10914 (-) 381 WP_269104988.1 VOC family protein -
  OZ415_RS00055 (OZ415_00055) - 11073..12140 (-) 1068 WP_269104989.1 iron-containing alcohol dehydrogenase family protein -
  OZ415_RS00060 (OZ415_00060) - 12218..13252 (-) 1035 WP_003142898.1 branched-chain amino acid aminotransferase -
  OZ415_RS00065 (OZ415_00065) - 13674..13796 (-) 123 WP_269104990.1 hypothetical protein -

Sequence

Protein


Download         Length: 182 a.a.        Molecular weight: 20014.46 Da        Isoelectric Point: 4.4023

>NTDB_id=764315 OZ415_RS00040 WP_026465541.1 9661..10209(+) (ssb) [Aerococcus urinaeequi strain 2020-HN-1]
MINNVVLVGRLTRDVDVRYTQSGVAVGSFSVAVERNFKNAQGERETDFINCVIWRKAAENFARFTRKGSLVGVEGSIQTR
NYENNQGQRVYVTEILVDNFSLLESKSVTESRPASDNNNSGFGGFNNNNANNNSYNNQNADPFDGNSFNQNSSSFNNGND
NPFPSSNDGSGSINVTDDDLPF

Nucleotide


Download         Length: 549 bp        

>NTDB_id=764315 OZ415_RS00040 WP_026465541.1 9661..10209(+) (ssb) [Aerococcus urinaeequi strain 2020-HN-1]
ATGATTAATAATGTTGTACTGGTCGGCCGTTTAACTCGTGACGTTGATGTGCGTTATACGCAAAGTGGCGTTGCTGTTGG
ATCTTTCAGCGTTGCCGTTGAAAGAAACTTTAAAAATGCCCAAGGTGAACGTGAGACAGATTTCATTAACTGTGTTATCT
GGCGTAAAGCAGCAGAGAATTTTGCGCGTTTTACCCGTAAAGGTTCATTAGTAGGTGTTGAAGGCAGCATCCAAACTCGA
AACTACGAGAATAACCAAGGACAACGTGTATACGTTACTGAGATTTTGGTTGATAACTTTAGTTTATTAGAATCAAAATC
AGTTACTGAAAGCCGCCCTGCCTCTGATAATAATAACAGTGGTTTTGGTGGATTTAATAACAATAACGCAAACAACAACA
GCTATAACAATCAAAATGCTGATCCATTTGATGGAAACAGCTTTAATCAAAACTCCTCTTCATTTAACAATGGTAACGAT
AACCCATTCCCATCATCTAATGATGGTTCTGGTTCAATCAATGTTACCGATGATGACTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

58.791

100

0.588
  ssbA Bacillus subtilis subsp. subtilis str. 168

50

100

0.5