Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   OZ911_RS07165 Genome accession   NZ_CP114035
Coordinates   1588363..1590576 (+) Length   737 a.a.
NCBI ID   WP_070086756.1    Uniprot ID   -
Organism   Pseudomonas fortuita strain GMI12077     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1583363..1595576
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OZ911_RS07145 (OZ911_07150) - 1585243..1585866 (+) 624 WP_023049045.1 glutathione S-transferase -
  OZ911_RS07150 (OZ911_07155) - 1586002..1586934 (+) 933 WP_016485471.1 ABC transporter ATP-binding protein -
  OZ911_RS07155 (OZ911_07160) - 1586931..1587710 (+) 780 WP_016485472.1 ABC transporter permease -
  OZ911_RS07160 (OZ911_07165) - 1587594..1588220 (-) 627 WP_016485473.1 DUF2062 domain-containing protein -
  OZ911_RS07165 (OZ911_07170) comA 1588363..1590576 (+) 2214 WP_070086756.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  OZ911_RS07170 (OZ911_07175) exbB 1590781..1591416 (+) 636 WP_016391244.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  OZ911_RS07175 (OZ911_07180) - 1591413..1591847 (+) 435 WP_016485476.1 biopolymer transporter ExbD -
  OZ911_RS07180 (OZ911_07185) lpxK 1591847..1592848 (+) 1002 WP_016485477.1 tetraacyldisaccharide 4'-kinase -
  OZ911_RS07185 (OZ911_07190) - 1592893..1593078 (+) 186 WP_003247142.1 Trm112 family protein -
  OZ911_RS07190 (OZ911_07195) kdsB 1593075..1593839 (+) 765 WP_023048425.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  OZ911_RS07195 (OZ911_07200) - 1593839..1594303 (+) 465 WP_023048424.1 low molecular weight protein-tyrosine-phosphatase -
  OZ911_RS07200 (OZ911_07205) murB 1594300..1595319 (+) 1020 WP_016485479.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 737 a.a.        Molecular weight: 79456.34 Da        Isoelectric Point: 9.6404

>NTDB_id=764115 OZ911_RS07165 WP_070086756.1 1588363..1590576(+) (comA) [Pseudomonas fortuita strain GMI12077]
MRTGMFALALGLLCPGLFPALPSVGWLITLAACAAVSVFTRVWPLGCFVLGLCWACWSAQQALDDRLAAGLDGRTLWLEG
RVVGLPARTAQGVRFELEAARSRRAELPQRLQLSWFDGPPLRAGEQWRLAVTLQRPAGLLNPHGPDREAQLLARRVGATG
TVKAGQLLAPVSGGWRDALRQRLLVVQANGRQAALVALVLGDGAGLAREDWQTLQATGTVHLLVISGQHIGLVAGLLYGL
VAGLARWGLWPARLPWLPCACALAMAAALAYGWLAGAGVPVQRACLMLAVVLLWRLRFRHLGAMLPLLLALVAVLLVEPL
AALLPGFWLSFAAVATLIYCFSGRLGGWRPWQAWTRAQWVIAIGLLPVLLATGLPVSLSAPLANLVAVPWVSLAVLPLAL
LGTLLLPLGGVGEALLWLAGGLLDGLFRLLALVAHQRPAWLAPALPLWAWLLVLLGALLVLLPRGVPLRGLGGVMLLALW
VPTEPVPLGQVEVWQLDVGQGLAVLLRTRHYNLLYDAGPARGETDLGERVVLPTLSKLGVDSLDLMVISHAHADHAGGAA
AIQRGLPVRRLIGGEALDDVPLQPCASGEQWNWDGVRFSLWRWADGQSSNDRSCVLLVEAQGERLLLAGDMEAAAERAWL
ADTEMPRIDWLQAPHHGSRSSSTEAFIRASAPRGVLISRGRNNSFGHPHVQVMERYQRHGLAVHDTAVEGALRLVLGRHE
EVEGIRGQRRFWRVRAE

Nucleotide


Download         Length: 2214 bp        

>NTDB_id=764115 OZ911_RS07165 WP_070086756.1 1588363..1590576(+) (comA) [Pseudomonas fortuita strain GMI12077]
ATGCGCACAGGGATGTTTGCGCTCGCGCTCGGGCTGTTGTGCCCGGGCCTTTTCCCCGCATTGCCATCGGTCGGATGGTT
GATAACGCTGGCTGCCTGCGCGGCCGTCAGCGTGTTTACCCGCGTTTGGCCATTGGGCTGTTTTGTGCTGGGGCTGTGTT
GGGCGTGCTGGTCTGCCCAGCAGGCCCTTGACGATCGCCTGGCTGCCGGCCTGGACGGCCGCACCTTGTGGCTGGAGGGG
CGGGTGGTCGGCCTTCCAGCGCGAACTGCGCAGGGCGTGCGCTTCGAGCTGGAGGCGGCACGCTCGCGGCGGGCCGAACT
GCCGCAACGGCTGCAACTGAGCTGGTTCGATGGGCCGCCGCTGCGGGCGGGCGAGCAGTGGCGGCTGGCGGTGACCTTGC
AGCGCCCGGCCGGGCTGCTCAACCCACATGGGCCCGACCGGGAGGCGCAACTGCTGGCGCGGCGGGTGGGCGCCACCGGT
ACGGTAAAAGCCGGGCAGCTACTGGCGCCGGTAAGCGGTGGTTGGCGCGATGCGCTGCGTCAGCGCTTGCTGGTGGTCCA
AGCCAATGGCCGGCAGGCCGCATTGGTGGCACTGGTGCTGGGTGACGGCGCTGGCCTGGCCCGGGAGGACTGGCAGACGT
TGCAGGCCACCGGTACGGTGCACTTGCTGGTTATTTCTGGCCAGCACATCGGCCTGGTGGCCGGTCTGCTGTACGGCCTG
GTGGCCGGGCTGGCGCGTTGGGGGCTGTGGCCCGCCCGGTTGCCGTGGCTGCCCTGTGCCTGTGCCCTGGCCATGGCGGC
GGCGTTGGCCTACGGCTGGCTGGCCGGTGCGGGTGTACCGGTGCAGCGTGCCTGCCTGATGCTGGCGGTAGTGCTGTTGT
GGCGCCTGCGTTTTCGCCACCTCGGCGCAATGCTGCCGCTATTGCTGGCGCTGGTCGCGGTGCTGCTGGTCGAACCCTTG
GCGGCGCTGCTGCCTGGGTTCTGGCTGTCGTTTGCCGCAGTGGCCACGCTCATCTACTGCTTCAGCGGCCGTTTGGGCGG
TTGGCGGCCCTGGCAGGCCTGGACGCGCGCGCAATGGGTGATCGCCATCGGCTTGCTGCCGGTGTTGCTGGCCACAGGTT
TACCGGTGAGTCTGAGTGCGCCGCTGGCCAATCTTGTCGCGGTGCCATGGGTTAGCCTGGCGGTGTTGCCGTTGGCGTTG
CTGGGGACGTTGCTGCTGCCGCTGGGTGGGGTAGGGGAAGCGTTGCTGTGGCTGGCGGGTGGCCTGCTGGATGGGCTGTT
CCGGCTGTTGGCGTTGGTGGCGCATCAGCGCCCGGCGTGGCTGGCCCCGGCCTTGCCGTTGTGGGCCTGGCTGCTGGTAT
TGCTGGGTGCGCTGCTGGTGCTGCTGCCTCGTGGCGTGCCTTTGCGGGGGTTGGGTGGGGTCATGTTGTTGGCGCTGTGG
GTGCCCACGGAGCCGGTGCCGCTCGGCCAGGTCGAGGTCTGGCAGCTAGACGTTGGCCAAGGGCTGGCGGTGCTGTTGCG
TACCCGGCATTACAACCTGCTGTACGACGCCGGGCCGGCCAGAGGGGAGACCGACCTGGGCGAGCGGGTGGTGCTCCCGA
CCTTGAGCAAGCTGGGGGTGGACAGCCTGGACTTGATGGTCATCAGCCATGCGCATGCCGACCATGCGGGCGGTGCTGCG
GCCATACAGCGTGGGCTGCCGGTCAGGCGGCTGATCGGTGGGGAAGCGCTGGATGATGTGCCGTTGCAGCCTTGTGCCAG
TGGCGAACAATGGAACTGGGATGGCGTGCGCTTTTCGCTATGGCGCTGGGCGGACGGGCAGAGTAGCAATGACCGTTCCT
GTGTCTTGCTGGTAGAGGCGCAGGGCGAGCGCTTGCTGCTGGCGGGGGATATGGAAGCTGCGGCCGAACGGGCCTGGCTG
GCGGACACAGAAATGCCGCGTATCGACTGGTTGCAGGCACCGCATCATGGCAGCCGCAGTTCGTCCACCGAGGCGTTCAT
CCGGGCTAGTGCGCCGCGCGGGGTATTGATTTCGCGAGGGCGTAACAACAGCTTCGGGCACCCGCATGTGCAGGTAATGG
AGCGTTATCAGCGGCATGGTCTGGCGGTGCATGACACGGCGGTGGAGGGGGCGTTGCGGTTGGTGTTGGGGCGGCATGAA
GAGGTTGAGGGTATCAGGGGGCAGCGGCGGTTTTGGCGGGTTCGAGCTGAGTGA

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(22-167)

Metallo-beta-lactamase superfamily (Lactamase_B)

(497-674)

Competence protein (Competence)

(198-464)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

59.059

98.1

0.579
  comA Ralstonia pseudosolanacearum GMI1000

34.137

100

0.365