Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   QMY17_RS00030 Genome accession   NZ_CP125812
Coordinates   3148..3744 (-) Length   198 a.a.
NCBI ID   WP_003225425.1    Uniprot ID   G4NT17
Organism   Bacillus subtilis strain N3378-3At     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1..8744
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMY17_RS00020 bofA 2576..2839 (-) 264 WP_003225421.1 sigma-K factor-processing regulator BofA -
  QMY17_RS00025 yaaL 2906..3130 (-) 225 WP_003242387.1 YaaL family protein -
  QMY17_RS00030 recR 3148..3744 (-) 597 WP_003225425.1 recombination protein RecR Machinery gene
  QMY17_RS00035 ebfC 3759..4082 (-) 324 WP_003225427.1 YbaB/EbfC family nucleoid-associated protein -
  QMY17_RS00040 dnaX 4106..5797 (-) 1692 WP_014478588.1 DNA polymerase III subunit gamma/tau -
  QMY17_RS00050 tadA 6274..6759 (-) 486 WP_003226784.1 tRNA adenosine(34) deaminase TadA -
  QMY17_RS00055 yaaI 6845..7390 (+) 546 WP_014478587.1 cysteine hydrolase family protein -
  QMY17_RS00060 sleL 7460..8743 (+) 1284 WP_014478586.1 glycoside hydrolase family 18 protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21974.53 Da        Isoelectric Point: 5.3504

>NTDB_id=764074 QMY17_RS00030 WP_003225425.1 3148..3744(-) (recR) [Bacillus subtilis strain N3378-3At]
MQYPEPISKLIDSFMKLPGIGPKTAVRLAFFVLGMKEDVVLDFAKALVNAKRNLTYCSVCGHITDQDPCYICEDTRRDKS
VICVVQDPKDVIAMEKMKEYNGQYHVLHGAISPMDGIGPEDIKIPELLKRLQDDQVTEVILATNPNIEGEATAMYISRLL
KPSGIKLSRIAHGLPVGGDLEYADEVTLSKALEGRREL

Nucleotide


Download         Length: 597 bp        

>NTDB_id=764074 QMY17_RS00030 WP_003225425.1 3148..3744(-) (recR) [Bacillus subtilis strain N3378-3At]
ATGCAATATCCTGAACCAATATCAAAGCTGATTGACAGCTTTATGAAATTGCCAGGGATCGGACCGAAAACAGCGGTTCG
TCTGGCTTTTTTTGTTCTAGGTATGAAAGAAGATGTAGTATTAGATTTTGCGAAAGCATTAGTAAATGCGAAACGCAACC
TGACATATTGTTCAGTTTGCGGGCATATTACAGATCAGGACCCTTGCTATATATGTGAAGATACGCGCAGGGATAAGTCT
GTTATCTGTGTTGTGCAAGACCCTAAGGATGTTATCGCTATGGAGAAAATGAAGGAATACAACGGACAGTATCACGTTCT
TCACGGCGCTATTTCTCCAATGGACGGCATTGGACCGGAGGATATTAAAATACCAGAATTGTTAAAACGATTACAGGATG
ATCAAGTGACAGAAGTGATCCTCGCGACAAACCCTAATATAGAAGGGGAAGCAACGGCGATGTATATATCAAGGCTCCTC
AAGCCGTCTGGTATTAAGCTCTCCCGTATTGCCCACGGACTGCCCGTCGGCGGTGACTTGGAATATGCTGACGAGGTCAC
TCTTTCTAAAGCACTTGAAGGAAGACGCGAATTGTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(40-78)

Toprim domain (Toprim_4)

(80-171)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NT17

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

100

100

1
  recR Streptococcus pneumoniae R6

62.121

100

0.621
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

52.041

98.99

0.515