Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   OTR81_RS05750 Genome accession   NZ_CP113980
Coordinates   1206687..1207247 (-) Length   186 a.a.
NCBI ID   WP_036094744.1    Uniprot ID   A0A841Z072
Organism   Listeria newyorkensis strain CMB191063     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1201687..1212247
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OTR81_RS05730 (OTR81_05810) - 1202180..1203067 (-) 888 WP_206539790.1 aldo/keto reductase -
  OTR81_RS05735 (OTR81_05805) - 1203398..1204399 (-) 1002 WP_036094746.1 DUF4003 family protein -
  OTR81_RS05740 (OTR81_05800) - 1204539..1205933 (-) 1395 WP_036094745.1 amino acid permease -
  OTR81_RS05745 (OTR81_05795) rpsR 1206393..1206632 (-) 240 WP_036061496.1 30S ribosomal protein S18 -
  OTR81_RS05750 (OTR81_05790) ssbA 1206687..1207247 (-) 561 WP_036094744.1 single-stranded DNA-binding protein Machinery gene
  OTR81_RS05755 (OTR81_05785) rpsF 1207307..1207600 (-) 294 WP_036094743.1 30S ribosomal protein S6 -
  OTR81_RS05760 (OTR81_05780) - 1208069..1209526 (+) 1458 WP_036094742.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 186 a.a.        Molecular weight: 20160.88 Da        Isoelectric Point: 4.7522

>NTDB_id=763983 OTR81_RS05750 WP_036094744.1 1206687..1207247(-) (ssbA) [Listeria newyorkensis strain CMB191063]
MMNRVVLVGRLTKDPELRYTPAGVAVATFTLAVNRNFTNQAGEREADFINCVVWRKPAENVANFLKKGSLAGVDGKVQTR
NYEGQDGKRVYVTEILAESVQFLEPRSANGGGNGGGYSNNNNDGGGQQQSYSTSNTGGGFNQQNDNSYGQQNQQQPQSQS
YQAPRNADPFASDGKPIDISDDDLPF

Nucleotide


Download         Length: 561 bp        

>NTDB_id=763983 OTR81_RS05750 WP_036094744.1 1206687..1207247(-) (ssbA) [Listeria newyorkensis strain CMB191063]
ATGATGAACCGTGTTGTATTAGTTGGTCGTCTGACAAAAGATCCTGAATTACGTTACACTCCTGCGGGCGTTGCAGTTGC
GACATTTACACTTGCTGTAAACCGCAACTTTACTAACCAAGCTGGAGAACGTGAAGCAGATTTCATCAATTGTGTTGTTT
GGAGAAAGCCGGCTGAAAACGTTGCGAATTTCCTTAAAAAAGGGAGTTTAGCAGGTGTTGACGGTAAGGTTCAAACGCGT
AATTATGAAGGTCAAGACGGTAAGCGTGTCTATGTAACAGAAATTCTTGCTGAAAGTGTCCAATTCCTAGAACCCCGCAG
TGCAAACGGTGGCGGTAATGGTGGTGGCTACAGCAATAACAATAATGATGGCGGTGGACAGCAGCAGTCGTATAGCACTA
GCAATACTGGCGGCGGCTTCAACCAACAGAATGATAATAGCTACGGACAACAGAATCAACAACAACCTCAATCTCAGAGT
TACCAAGCACCACGTAACGCCGATCCATTTGCTAGTGATGGCAAGCCAATCGACATTTCAGATGACGATTTGCCGTTCTA
A

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A841Z072

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

64.398

100

0.661
  ssb Latilactobacillus sakei subsp. sakei 23K

55.851

100

0.565