Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   OIY87_RS09950 Genome accession   NZ_CP113954
Coordinates   1987997..1988512 (-) Length   171 a.a.
NCBI ID   WP_003066357.1    Uniprot ID   -
Organism   Streptococcus gallolyticus strain XH2168     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1982997..1993512
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OIY87_RS09920 (OIY87_11235) - 1984147..1985091 (+) 945 WP_003066347.1 magnesium transporter CorA family protein -
  OIY87_RS09925 (OIY87_11240) - 1985673..1986329 (+) 657 WP_247945787.1 DUF1129 domain-containing protein -
  OIY87_RS09930 (OIY87_11245) - 1986375..1986824 (-) 450 WP_247945786.1 hypothetical protein -
  OIY87_RS09935 (OIY87_11250) - 1986826..1987035 (-) 210 WP_009854897.1 helix-turn-helix domain-containing protein -
  OIY87_RS09940 (OIY87_11255) - 1987038..1987562 (-) 525 WP_269724945.1 DUF2975 domain-containing protein -
  OIY87_RS09945 (OIY87_11260) rpsR 1987697..1987936 (-) 240 WP_000068664.1 30S ribosomal protein S18 -
  OIY87_RS09950 (OIY87_11265) ssbA 1987997..1988512 (-) 516 WP_003066357.1 single-stranded DNA-binding protein Machinery gene
  OIY87_RS09955 (OIY87_11270) rpsF 1988524..1988814 (-) 291 WP_003066359.1 30S ribosomal protein S6 -
  OIY87_RS09960 (OIY87_11275) - 1989039..1989203 (-) 165 WP_009854901.1 hypothetical protein -
  OIY87_RS09965 (OIY87_11280) - 1989429..1989977 (-) 549 WP_009854902.1 biotin transporter BioY -
  OIY87_RS09970 (OIY87_11285) bioD 1989977..1990645 (-) 669 WP_003066365.1 dethiobiotin synthase -
  OIY87_RS09975 (OIY87_11290) bioB 1990638..1991573 (-) 936 WP_009854904.1 biotin synthase BioB -
  OIY87_RS09980 (OIY87_11295) ahpF 1991849..1993387 (-) 1539 WP_269724946.1 alkyl hydroperoxide reductase subunit F -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18919.49 Da        Isoelectric Point: 4.7187

>NTDB_id=763843 OIY87_RS09950 WP_003066357.1 1987997..1988512(-) (ssbA) [Streptococcus gallolyticus strain XH2168]
MINNVVLVGRMTRDAELRYTPSNQAVATFTLAVNRNFKNQNGEREADFINCVIWRQQAENLSNWAKKGTLIGVTGRIQTR
NYENQQGQRVYVTEIVADNFQILESRATREGQSGGSYNGGFNNNNSSFGGSSNDGGFSSQSSQSQTPNFGRDESPFGNSN
PMDISDDDLPF

Nucleotide


Download         Length: 516 bp        

>NTDB_id=763843 OIY87_RS09950 WP_003066357.1 1987997..1988512(-) (ssbA) [Streptococcus gallolyticus strain XH2168]
ATGATTAATAATGTAGTACTTGTCGGTCGTATGACTCGCGATGCAGAACTCCGTTACACACCATCTAATCAAGCTGTTGC
CACATTTACACTTGCTGTAAATCGCAACTTTAAAAATCAAAATGGTGAACGTGAAGCTGATTTTATTAACTGTGTGATTT
GGCGCCAACAGGCAGAAAATCTGTCTAACTGGGCTAAAAAAGGCACATTGATTGGTGTTACAGGTCGTATCCAGACTCGT
AATTATGAAAATCAACAAGGTCAACGTGTTTACGTAACAGAGATTGTTGCAGATAATTTCCAAATCTTGGAAAGCCGTGC
TACACGTGAAGGTCAATCAGGTGGTTCATATAACGGTGGATTCAACAATAACAATTCATCATTTGGTGGCTCATCAAACG
ATGGTGGTTTCTCATCGCAATCTTCACAATCACAAACACCTAACTTTGGTCGTGATGAAAGCCCATTTGGCAATTCAAAT
CCAATGGACATTTCAGATGACGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

57.222

100

0.602
  ssb Latilactobacillus sakei subsp. sakei 23K

58.96

100

0.596